Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thamnophis_20sirtalis_20[refseq_20GCF_5F001077635.1_202015-06-26] 7,930 sequences; 1,424,897,867 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq2696 100 5e-16 seq2281 86.0 1e-11 seq520 86.0 1e-11 >seq2696 Length=106704 Score = 100 bits (110), Expect = 5e-16 Identities = 162/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| || || || | || | ||| | || | ||| || || || || || Sbjct 61586 ATGCCACCCCTCAGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCA 61527 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | || || |||| |||| || || |||||||| || ||||||||||||||||| Sbjct 61526 GAGAGAGTGCGGCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAATCTCTGTTGGTCAGGA 61467 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||||||||| || ||||| || ||||| || || || | || Sbjct 61466 GGAATGCCTTCTTTATCCTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCC 61407 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 || ||||| || |||||||| || || || || || | || ||||||||||| Sbjct 61406 ACCTCTAGGGTGATGGTTTTCCCGGTCAAGGTCTTCACAAAGATCTGCATTTT 61354 Score = 96.9 bits (106), Expect = 6e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 171839 AATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATC 171898 || |||||| || || || | || | ||| | || | ||| || || || || || Sbjct 61815 AAAACCACCCCTCAGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 61756 Query 171899 TGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGG 171958 || | || || |||| |||| || || |||||||| || ||||||||||||||||| Sbjct 61755 AGAGAGAGTGCGGCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAATCTCTGTTGGTCAGG 61696 Query 171959 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTC 172018 || || ||||||||||| || ||||| || ||||| || || || | || Sbjct 61695 AGGAATGCCTTCTTTATCCTGGATTTTGGCCTTGACATTTTCAATGGTGTCACTGGGCTC 61636 Query 172019 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || ||||| || |||||||| || || || || || | || |||||||| Sbjct 61635 CACCTCTAGGGTGATGGTTTTCCCGGTCAAGGTCTTCACAAAGATCTGCAT 61585 Score = 91.5 bits (100), Expect = 3e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 171839 AATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATC 171898 || |||||| || || || | || | ||| | || | ||| || || || || || Sbjct 62735 AAAACCACCCCTCAGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 62676 Query 171899 TGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGG 171958 || | || || |||| |||| || || |||||||| || ||||||||||||||||| Sbjct 62675 AGAGAGAGTGCGGCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAATCTCTGTTGGTCAGG 62616 Query 171959 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTC 172018 || || ||||||||||| || ||||| || ||||| || || || | || Sbjct 62615 AGGAATGCCTTCTTTATCCTGGATTTTGGCCTTGACATTTTCAATGGTGTCACTGGGCTC 62556 Query 172019 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066 || ||||| || |||||||| || || || || || | || ||||| Sbjct 62555 CACCTCTAGGGTGATGGTTTTCCCGGTCAAGGTCTTCACAAAGATCTG 62508 >seq2281 Length=154634 Score = 86.0 bits (94), Expect = 1e-11 Identities = 80/102 (78%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 39177 AAAGTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTA 39236 ||||| | ||||||||||| |||||||| || ||||||||||| | ||||||| || | Sbjct 5547 AAAGTAAGGCCTGGCATTAACCCTCTCTTCTTGAGCCAAAATATGGCTGCAAAAGCACCA 5606 Query 39237 GAAAAGAATATACCCTCCACACACGCAAATGCTATTATTCTT 39278 |||||||| || || || ||| ||||| || || | |||| Sbjct 5607 GAAAAGAAGATTCCTTCGACAGCAGCAAACGCAATCACTCTT 5648 >seq520 Length=716008 Score = 86.0 bits (94), Expect = 1e-11 Identities = 70/85 (82%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947 || |||||||| || | || ||| | || ||||||||||| |||||||||||||| | | Sbjct 122111 ATGTTATAATCAGACAGAGTACGTCCATCCTCCAATTGTTTGCCAGCAAAAATTAAACGC 122052 Query 171948 TGTTGGTCAGGTGGTATTCCTTCTT 171972 ||||||||||| || ||||||| || Sbjct 122051 TGTTGGTCAGGAGGAATTCCTTGTT 122027 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905046278394000