Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thamnophis_20sirtalis_20[refseq_20GCF_5F001077635.1_202015-06-26] 7,930 sequences; 1,424,897,867 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq1856 165 1e-34 seq3994 147 3e-29 seq79 107 2e-17 >seq1856 Length=223512 Score = 165 bits (182), Expect = 1e-34 Identities = 156/199 (78%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 1254348 GCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTG 1254407 ||||| |||||| ||| | ||||||||||| |||||||||||||| | | ||| ||| Sbjct 175048 GCCAGCTCGCCGGGCAGCAGGAGGCGCACGGCCGTCTGGATCTCGCGGGAGGTGATGGTG 175107 Query 1254408 TTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCG 1254467 ||||||||| |||| ||||| ||| ||||||| ||||||| |||| |||||| Sbjct 175108 GAGCGCTTGTTGTAGTGGGCCAGGCGGGAAGCCTCGGCCGCGATGCGCTCGAAGATGTCG 175167 Query 1254468 TTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACC 1254527 ||||| || |||||||||| ||| | |||| ||||||||| ||||||||| ||| Sbjct 175168 TTGACGAAGGAGTTCATGATGCTCATGGCCTTGGAGGAGATGCCGGTGTCGGGGTGGACC 175227 Query 1254528 TGCTTGAGCACCTTGTAGA 1254546 || ||||| |||||||||| Sbjct 175228 TGTTTGAGGACCTTGTAGA 175246 >seq3994 Length=24899 Score = 147 bits (162), Expect = 3e-29 Identities = 155/204 (76%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| || || || ||| || ||||| ||||| ||||||| |||||| | | || Sbjct 9301 GCTTGGCGAGCTCCCCAGGCAGGAGGAGGCGGACGGCCGTCTGGACCTCGCGGGAGGTGA 9242 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||| ||||| ||| ||||||| | ||||||| |||| | Sbjct 9241 TGGTGGAGCGCTTGTTGTAGTGAGCCAGTCGGGAAGCCTCGGCGGCGATGCGCTCGAAGA 9182 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| | | | |||||| ||| | |||| ||||||||| |||||||| Sbjct 9181 TGTCGTTGACGGAGGGGGTCATGATGCTCATGGCCTTGGAGGAGATGCCGGTGTCGGGGT 9122 Query 1254523 GCACCTGCTTGAGCACCTTGTAGA 1254546 | ||||||||||| |||||||||| Sbjct 9121 GGACCTGCTTGAGGACCTTGTAGA 9098 >seq79 Length=1654135 Score = 107 bits (118), Expect = 2e-17 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 1628167 ACGATCTCGGTGCACAGGTTGGCCGACGTCGTCGTACCCAGGTTCTGCTGGTTGGTGGTC 1628226 || ||||||||||| |||||| || | | || |||||||||||||||||| | || Sbjct 1258287 ACAATCTCGGTGCAGAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTC 1258228 Query 1628227 AGGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGATCTGCGCCGCGACG 1628286 ||||| || |||||||| |||||||||||||| || ||||| |||| | | ||| | Sbjct 1258227 CGGTTGCAGGAGTCCTTGTAGAGCATGTAGGGCGTCCCTGTCTCCGTCTGGGACTCGATG 1258168 Query 1628287 ATGGCCGACCAGATCTG 1628303 ||||| |||||| ||| Sbjct 1258167 ATGGCGTACCAGAGCTG 1258151 Score = 105 bits (116), Expect = 8e-17 Identities = 85/103 (83%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 1630175 CGGCAAAGCCGATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGT 1630234 |||| | |||||||| || || |||||||||||||||||||| || || || ||||||| Sbjct 1254916 CGGCCACCCCGATGCCCCCCGCGGACTTGGAGATGAGCGCGCAGTGCTTCAGGGTGTCGT 1254857 Query 1630235 AGATGCCCTCGATCGAGTCGGCCTTCATGTCCACGAGAAAGCA 1630277 ||||||||||||| |||| |||||||| || ||| ||||| Sbjct 1254856 AGATGCCCTCGATGCTGTCGTCCTTCATGCACAGGAGGAAGCA 1254814 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106488427063810