Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thamnophis_20sirtalis_20[refseq_20GCF_5F001077635.1_202015-06-26] 7,930 sequences; 1,424,897,867 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq2696 96.9 3e-15 >seq2696 Length=106704 Score = 96.9 bits (106), Expect = 3e-15 Identities = 147/208 (71%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || | ||||| ||||| || || || || || || ||| Sbjct 61585 ATGCAGATCTTTGTGAAGACCTTGACCGGGAAAACCATCACCCTAGAGGTGGAGCCCAGT 61644 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || || || ||||| || |||||||| || ||||| || ||| Sbjct 61645 GACACCATTGAAAATGTCAAGGCCAAAATCCAGGATAAAGAAGGCATTCCTCCTGACCAA 61704 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | ||||||||||| || || |||||||| || | | | || || || ||| Sbjct 61705 CAGAGATTGATCTTTGCTGGCAAGCAGCTGGAAGACGGCCGCACTCTCTCTGACTACAAC 61764 Query 24884 ATTCAAAAGGAATCGACACTACA-CTTG 24910 || || ||||| || || || || |||| Sbjct 61765 ATCCAGAAGGAGTCCACCCTCCATCTTG 61792 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/208 (70%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || | ||||| ||||| || || || || || || ||| Sbjct 61357 ATGCAGATCTTTGTGAAGACCTTGACCGGGAAAACCATCACCCTAGAGGTGGAGCCCAGT 61416 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || || ||||| || |||||||| || ||||| || ||| Sbjct 61417 GACACCATTGAGAATGTCAAGGCCAAAATCCAGGATAAAGAAGGCATTCCTCCTGACCAA 61476 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | ||||||||||| || || |||||||| || | | | || || || ||| Sbjct 61477 CAGAGATTGATCTTTGCTGGCAAGCAGCTGGAAGACGGCCGCACTCTCTCTGACTACAAC 61536 Query 24884 ATTCAAAAGGAATCGACACTACA-CTTG 24910 || || ||||| || || || || |||| Sbjct 61537 ATCCAGAAGGAGTCCACCCTCCATCTTG 61564 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/205 (70%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 24707 CAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGAC 24766 ||||||||| | || || | ||||| ||||| || || || || || || ||| ||| Sbjct 62508 CAGATCTTTGTGAAGACCTTGACCGGGAAAACCATCACCCTAGAGGTGGAGCCCAGTGAC 62567 Query 24767 ACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAA 24826 || | |||| || || || ||||| || |||||||| || ||||| || ||||| Sbjct 62568 ACCATTGAAAATGTCAAGGCCAAAATCCAGGATAAAGAAGGCATTCCTCCTGACCAACAG 62627 Query 24827 CGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATT 24886 | ||||||||||| || || |||||||| || | | | || || || ||||| Sbjct 62628 AGATTGATCTTTGCTGGCAAGCAGCTGGAAGACGGCCGCACTCTCTCTGACTACAACATC 62687 Query 24887 CAAAAGGAATCGACACTACA-CTTG 24910 || ||||| || || || || |||| Sbjct 62688 CAGAAGGAGTCCACCCTCCATCTTG 62712 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449853003900400