Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thamnophis_20sirtalis_20[refseq_20GCF_5F001077635.1_202015-06-26] 7,930 sequences; 1,424,897,867 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq1856 219 7e-51 seq3994 197 2e-44 seq79 102 1e-15 >seq1856 Length=223512 Score = 219 bits (242), Expect = 7e-51 Identities = 195/244 (80%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| || || |||||||||||| | ||||| |||||| ||| Sbjct 175004 TGTACTTGGTGACGGCCTTGGTCCCTTCGGAGACGGCGTGCTTAGCCAGCTCGCCGGGCA 175063 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||||||||||| |||||||||||||||| | ||| ||| ||||||||| | Sbjct 175064 GCAGGAGGCGCACGGCCGTCTGGATCTCGCGGGAGGTGATGGTGGAGCGCTTGTTGTAGT 175123 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | ||||||||| ||||||| ||||||| |||| ||||||||||| || ||||||| Sbjct 175124 GGGCCAGGCGGGAAGCCTCGGCCGCGATGCGCTCGAAGATGTCGTTGACGAAGGAGTTCA 175183 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| ||||||||| ||||| ||||| ||||||| Sbjct 175184 TGATGCTCATGGCCTTGGAGGAGATGCCGGTGTCGGGGTGGACCTGTTTGAGGACCTTGT 175243 Query 1485710 AAAC 1485713 | || Sbjct 175244 AGAC 175247 >seq3994 Length=24899 Score = 197 bits (218), Expect = 2e-44 Identities = 190/244 (78%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||| ||||||||||||||||| ||||| |||||||||||| |||| || || || ||| Sbjct 9340 TGTATTTGGTGACGGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCGAGCTCCCCAGGCA 9281 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || ||||| ||||| ||||||| |||||||| | ||| ||| ||||||||| | Sbjct 9280 GGAGGAGGCGGACGGCCGTCTGGACCTCGCGGGAGGTGATGGTGGAGCGCTTGTTGTAGT 9221 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | ||||| ||| ||||||| | ||||||| |||| ||||||||||| | | | ||| Sbjct 9220 GAGCCAGTCGGGAAGCCTCGGCGGCGATGCGCTCGAAGATGTCGTTGACGGAGGGGGTCA 9161 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| ||||||||| ||||||||||| ||||||| Sbjct 9160 TGATGCTCATGGCCTTGGAGGAGATGCCGGTGTCGGGGTGGACCTGCTTGAGGACCTTGT 9101 Query 1485710 AAAC 1485713 | || Sbjct 9100 AGAC 9097 >seq79 Length=1654135 Score = 102 bits (112), Expect = 1e-15 Identities = 98/126 (78%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 2071584 CTCGGTGCACAGGTTGGCCGACATCGTGGTGCCCAGGTTCTGCTGGTTGCTGGTCAGGTT 2071643 ||||||||| |||||| || | ||||||||||||||||||||||||| || |||| Sbjct 1258282 CTCGGTGCAGAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCGGTT 1258223 Query 2071644 GACGGCGTCCTTGTGCAGCATGTAGGGCGCACCCGTCTCGATCTGCGCCGTGACGATGGC 2071703 | || |||||||| ||||||||||||| || ||||| |||| | | || |||||| Sbjct 1258222 GCAGGAGTCCTTGTAGAGCATGTAGGGCGTCCCTGTCTCCGTCTGGGACTCGATGATGGC 1258163 Query 2071704 CGACCA 2071709 |||| Sbjct 1258162 GTACCA 1258157 Score = 91.5 bits (100), Expect = 2e-12 Identities = 82/103 (80%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 2073650 CGGCAAAGCCGATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGT 2073709 |||| | |||||||| || || | |||||||||||||||||| | ||||| || |||| Sbjct 1254916 CGGCCACCCCGATGCCCCCCGCGGACTTGGAGATGAGCGCGCAGTGCTTCAGGGTGTCGT 1254857 Query 2073710 AGATGCCCTCGATCGAGTCGGCCTTCATGTCCAACAGAAAGCA 2073752 ||||||||||||| |||| |||||||| || || ||||| Sbjct 1254856 AGATGCCCTCGATGCTGTCGTCCTTCATGCACAGGAGGAAGCA 1254814 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915402849731270