Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thamnophis_20sirtalis_20[refseq_20GCF_5F001077635.1_202015-06-26]
7,930 sequences; 1,424,897,867 total letters
Query= NC_022098.1
Length=2473870
Score E
Sequences producing significant alignments: (Bits) Value
seq1856 219 7e-51
seq3994 197 2e-44
seq79 102 1e-15
>seq1856
Length=223512
Score = 219 bits (242), Expect = 7e-51
Identities = 195/244 (80%), Gaps = 0/244 (0%)
Strand=Plus/Plus
Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529
|||||||||||||||||||||| || || |||||||||||| | ||||| |||||| |||
Sbjct 175004 TGTACTTGGTGACGGCCTTGGTCCCTTCGGAGACGGCGTGCTTAGCCAGCTCGCCGGGCA 175063
Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589
| ||||||||||| |||||||||||||||| | ||| ||| ||||||||| |
Sbjct 175064 GCAGGAGGCGCACGGCCGTCTGGATCTCGCGGGAGGTGATGGTGGAGCGCTTGTTGTAGT 175123
Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649
| ||||||||| ||||||| ||||||| |||| ||||||||||| || |||||||
Sbjct 175124 GGGCCAGGCGGGAAGCCTCGGCCGCGATGCGCTCGAAGATGTCGTTGACGAAGGAGTTCA 175183
Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709
|||| ||| | ||| ||||||||| ||||||||| ||||| ||||| |||||||
Sbjct 175184 TGATGCTCATGGCCTTGGAGGAGATGCCGGTGTCGGGGTGGACCTGTTTGAGGACCTTGT 175243
Query 1485710 AAAC 1485713
| ||
Sbjct 175244 AGAC 175247
>seq3994
Length=24899
Score = 197 bits (218), Expect = 2e-44
Identities = 190/244 (78%), Gaps = 0/244 (0%)
Strand=Plus/Minus
Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529
|||| ||||||||||||||||| ||||| |||||||||||| |||| || || || |||
Sbjct 9340 TGTATTTGGTGACGGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCGAGCTCCCCAGGCA 9281
Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589
|| ||||| ||||| ||||||| |||||||| | ||| ||| ||||||||| |
Sbjct 9280 GGAGGAGGCGGACGGCCGTCTGGACCTCGCGGGAGGTGATGGTGGAGCGCTTGTTGTAGT 9221
Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649
| ||||| ||| ||||||| | ||||||| |||| ||||||||||| | | | |||
Sbjct 9220 GAGCCAGTCGGGAAGCCTCGGCGGCGATGCGCTCGAAGATGTCGTTGACGGAGGGGGTCA 9161
Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709
|||| ||| | ||| ||||||||| ||||||||| ||||||||||| |||||||
Sbjct 9160 TGATGCTCATGGCCTTGGAGGAGATGCCGGTGTCGGGGTGGACCTGCTTGAGGACCTTGT 9101
Query 1485710 AAAC 1485713
| ||
Sbjct 9100 AGAC 9097
>seq79
Length=1654135
Score = 102 bits (112), Expect = 1e-15
Identities = 98/126 (78%), Gaps = 0/126 (0%)
Strand=Plus/Minus
Query 2071584 CTCGGTGCACAGGTTGGCCGACATCGTGGTGCCCAGGTTCTGCTGGTTGCTGGTCAGGTT 2071643
||||||||| |||||| || | ||||||||||||||||||||||||| || ||||
Sbjct 1258282 CTCGGTGCAGAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCGGTT 1258223
Query 2071644 GACGGCGTCCTTGTGCAGCATGTAGGGCGCACCCGTCTCGATCTGCGCCGTGACGATGGC 2071703
| || |||||||| ||||||||||||| || ||||| |||| | | || ||||||
Sbjct 1258222 GCAGGAGTCCTTGTAGAGCATGTAGGGCGTCCCTGTCTCCGTCTGGGACTCGATGATGGC 1258163
Query 2071704 CGACCA 2071709
||||
Sbjct 1258162 GTACCA 1258157
Score = 91.5 bits (100), Expect = 2e-12
Identities = 82/103 (80%), Gaps = 0/103 (0%)
Strand=Plus/Minus
Query 2073650 CGGCAAAGCCGATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGT 2073709
|||| | |||||||| || || | |||||||||||||||||| | ||||| || ||||
Sbjct 1254916 CGGCCACCCCGATGCCCCCCGCGGACTTGGAGATGAGCGCGCAGTGCTTCAGGGTGTCGT 1254857
Query 2073710 AGATGCCCTCGATCGAGTCGGCCTTCATGTCCAACAGAAAGCA 2073752
||||||||||||| |||| |||||||| || || |||||
Sbjct 1254856 AGATGCCCTCGATGCTGTCGTCCTTCATGCACAGGAGGAAGCA 1254814
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7915402849731270
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |