Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thamnophis_20sirtalis_20[refseq_20GCF_5F001077635.1_202015-06-26] 7,930 sequences; 1,424,897,867 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq2320 387 1e-101 seq73 96.9 3e-14 seq107 93.3 3e-13 >seq2320 Length=150232 Score = 387 bits (428), Expect = 1e-101 Identities = 946/1416 (67%), Gaps = 26/1416 (2%) Strand=Plus/Plus Query 281426 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 281485 ||||| ||||| || |||||||| ||||| | |||||||| || ||||| || || || Sbjct 91752 GCAGTAACATTGAGGATACCATTTGCATCTATGTCAAATGTCACCTCAATCTGGGGCACA 91811 Query 281486 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTA 281545 || | | |||||||| || ||| || | ||| | ||||| ||| || || || Sbjct 91812 CCACGAGGTGCAGGTGGAATACCTGTCAGGTCAAACTTGCCCAGCAGATTGTTGTCCTTG 91871 Query 281546 GTGAATTTTCGTTCACCCTCGAAAATTTGGAT-AGTA-ACTACAGTTTGATTATCTGAAT 281603 || | || |||||||| | | ||| | || | ||||| | || || ||||||| Sbjct 91872 GTCATGGCTCTCTCACCCTCATATACTTGCACCAGCACACTAC--TCTGGTTGTCTGAAT 91929 Query 281604 AAGTTGTAAATACTCTGGATTTT-TTACAAGGAATTGTTGTGTTTCTATCAATAATATTG 281662 | || || || ||||| ||| || ||||| |||||||| | | || | Sbjct 91930 AGGTGGTGAAGG-TCTGGGTTTGCTTGGTGGGAATAGTTGTGTTGCGTTTGATTAAGGCA 91988 Query 281663 GTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACA 281722 ||||| | ||||||||| || || | ||| |||||||| || | ||||||| || | Sbjct 91989 GTCATCACACCACCAGCAGTCTCAATACCCAGAGAAAGTGGTGCTACATCAAGCAGCAGC 92048 Query 281723 ATATTTTGAAGTTTTTCATCAGTT-TGACCAACAAGAATAGCTGCTTGAATAGCAGCACC 281781 | | ||| | ||||| | | || | ||| | |||||||| || || | |||||| || Sbjct 92049 AGGTCTTGTACATTTTC-TGATTTGTCACCCATCAGAATAGCAGCCTGCACAGCAGCGCC 92107 Query 281782 ATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAAT- 281840 |||||| ||||||||||||||||| | ||| ||||| | ||| ||||| || || | Sbjct 92108 ATATGCCACAGCTTCATCAGGATTTATGCTTTTGTTTAGCTCTTTTCCATTAAAGAAGTC 92167 Query 281841 TTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCAT 281900 ||| | || || | | ||| |||||||||| ||| || ||||| | |||||||||| Sbjct 92168 TTGGAGCAACTT-TTGGATCTTGGGAATACGAGTTGAGCCACCAACCAGAACAATTTCAT 92226 Query 281901 GCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAG 281960 | ||| ||| || || || | ||| | | | || || || ||||||||| | Sbjct 92227 TAATTTGTCCTTTGTCTAGCTTAGCATCACGAAGAGCCTTCTCCACAGGTTCAAGAGTAC 92286 Query 281961 CTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAAT 282020 | | || | || | | || || || || ||| | |||| | || ||| Sbjct 92287 CACGGAAGAGATCAGCATTGAGCTCCTCAAAGCGAGCACGGGTAATGGATGTATAGAAAT 92346 Query 282021 CAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCAC 282080 |||| || || || || || |||| ||||| | || ||||| || || || | || Sbjct 92347 CAATGCCATCAAATAATGAGTCAATCTCAATAGAAGCCTGAGTGGAGGAGCTCAGGGTAC 92406 Query 282081 GTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTG--ATTCAA 282138 | || || | ||||| ||||| | || | ||| | || | ||| ||| | | Sbjct 92407 GCTTGGCTCTCTCACAGGCTGTGCGGAGCCGTCGAACTGC--TCGCTTGTTGCCAGCAAT 92464 Query 282139 ATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAA 282198 || |||| || | |||||| || || ||| | | || | ||||| ||||| Sbjct 92465 GTCACGCTTATGCTTGCGCTTGAATTCCTCCACAAAGTGACTCACCATGCGATTGTCAAA 92524 Query 282199 ATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTC 282258 || || || ||||| | |||| ||| | |||| | | |||| || | |||||||| Sbjct 92525 GTCCTCCCCACCCAAGTGGGTATCTCCAGCAGTAGATTTCACTTCAAAGATGCCATCTTC 92584 Query 282259 AAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCAT 282318 | | ||||| | ||||||| || |||||||||| ||||| || || |||||| | Sbjct 92585 GATGGTCAAAATGGAAACATCAAATGTGCCACCACCCAAGTCAAAGATCAGAACATTCTT 92644 Query 282319 ------TTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTC 282372 | || || |||||||| | |||||| |||| |||||||| || || || Sbjct 92645 CTCACCTGCTCTGCTCCCTTTTTTATCCAAACCATAGGCAATGGCAGCAGCCGTGGGCTC 92704 Query 282373 ATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCT 282432 |||||| || | ||| || || ||||| | ||| | |||||||||||||||||||| | Sbjct 92705 ATTAATGATGCGCAATACGTTGAGACCTGTAATGGTACCTGCATCTTTAGTGGCTTGGCG 92764 Query 282433 TTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCA-TCTGTTACTTCTTTTCCAA 282491 ||| || || || || || ||||| |||||||| || ||| |||| |||| || | Sbjct 92765 TTGGGAGTCATTGAAGTAGGCAGGTACAGTAATCACAGCACTCTG-GACTTTGCAACCCA 92823 Query 282492 TATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAG 282551 ||||| ||| ||| |||||||| | || | ||| || ||||||| ||| ||| Sbjct 92824 GGTAAGCCTCAGCTATTTCCTTCATTTTGGTCAATACCATAGAGGAAATTTCTTCAGGAA 92883 Query 282552 AATATTGCTTGGATTCATTTTGATATGAT--ACTTCAAAATATGGTTTATTACCAACATT 282609 | | ||| ||| | | || | |||| | | || || ||| || | Sbjct 92884 AGAAGGACTTACTCTCACCCT--TGTGCTCGACTTGCACCTTGGGCTTCCCACCTTCACT 92941 Query 282610 AATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCT 282669 | || || ||||| | |||||||| || || || || |||||| ||| | | Sbjct 92942 CACCACACGGAAAGGCCAGTGCTTCATATCCGACTGCACCGTTGGGTCATCAAATTTGCG 93001 Query 282670 ACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTT 282729 ||||| | || || ||||||||||| || ||| | ||||| | || | |||| || Sbjct 93002 GCCAATGAGACGCTTGGCATCAAAAATGGTGTTGTTGGGATTCATAGCCACCTGATTCTT 93061 Query 282730 GGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCG 282789 |||||||||||| || || |||| || || ||||| | |||||| || || ||||| Sbjct 93062 GGCTGCATCTCCGATGAGGCGTTCCGTGTCCGTAAAGGCAACATAGCTCGGTGTGGTGCG 93121 Query 282790 ATTACCTTGATCATTCGCAATAATTTCAACTTTACC 282825 || ||||| || || || ||||| || ||||| || Sbjct 93122 GTTGCCTTGGTCGTTGGCGATAATCTCCACTTTCCC 93157 >seq73 Length=1862180 Score = 96.9 bits (106), Expect = 3e-14 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 400294 aaaTGTACCCTAATTTTGACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGCCTT 400353 || || || || ||||||||||| |||||||||||||| ||| | ||| | ||||||||| Sbjct 678044 AACTGCACTCTCATTTTGACAGAAGGAGATTCAGCTAAGACACTAGCTGTTTCTGGCCTT 678103 Query 400354 AATGTTATTGGAAGAGATTATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGTT 400413 ||| | || || || | |||||||| || ||||| |||||||| || | ||||| Sbjct 678104 GGAGTTGTGGGTAGGGACAAATATGGAGTATTTCCACTGCGAGGAAAAATTCTTAATGTA 678163 Query 400414 AGGGATGC 400421 |||| || Sbjct 678164 CGGGAAGC 678171 >seq107 Length=1493841 Score = 93.3 bits (102), Expect = 3e-13 Identities = 110/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 ||||| || | || || |||| ||||| || ||||| ||||||||||||| | || Sbjct 1127599 TTTTTGTCCAAGCCGTAAGCAATCGCAGCTGCGGTTGGCTCATTAATAATTCGGAGCACG 1127658 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || ||||||||||| |||| |||||||| || ||||| | || || || || || || Sbjct 1127659 TTGAGACCAGCAATGGTTCCGGCATCTTTTGTAGCTTGGCGCTGGGAGTCATTGAAGTAA 1127718 Query 282452 GCAGGAACAGTAATAACGGCATCTGTTAC 282480 || || || || | ||||||| ||| || Sbjct 1127719 GCCGGGACTGTGACCACGGCATTTGTAAC 1127747 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740241070512180