Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thamnophis_20sirtalis_20[refseq_20GCF_5F001077635.1_202015-06-26] 7,930 sequences; 1,424,897,867 total letters Query= NC_024303.1 Length=144898 Score E Sequences producing significant alignments: (Bits) Value seq4081 89.7 5e-13 >seq4081 Length=21578 Score = 89.7 bits (98), Expect = 5e-13 Identities = 127/176 (72%), Gaps = 2/176 (1%) Strand=Plus/Minus Query 21121 TTCTAGCATTTGGGGGCCTAGCTGCGATGGCTTAGATTGCATTGTTAAGCGGTGTGAACT 21180 || ||| || ||||| || | || |||||| | ||| | |||||| |||| |||| || Sbjct 12666 TTGTAGTATATGGGGACCAACTTGTGATGGCCTTGATCGTATTGTTGAGCGTTGTGGCCT 12607 Query 21181 GCCAGAGCTTCAAGTGGGCGACTGGCTCATATTTGAAAACATGGGCGCTTACAGCTTGGT 21240 ||||| ||||| || || || ||| | | |||||||||||||| || || | || | Sbjct 12606 ACCAGAACTTCAGGTTGGGGATTGGATGTTGTTTGAAAACATGGGAGCCTATA-CTGTGG 12548 Query 21241 CAG-CTCTTCAACCTTTAACGGCTTCCCAAAGCCAGAAAAGCACTATGTTATTTCA 21295 ||| | |||| ||||| || || || | | |||| || |||||||| || ||| Sbjct 12547 CAGCCGCTTCTACCTTCAATGGATTTCAGAGGCCAACAATACACTATGTAATGTCA 12492 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 463499651042400