Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thamnophis_20sirtalis_20[refseq_20GCF_5F001077635.1_202015-06-26] 7,930 sequences; 1,424,897,867 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq2696 154 3e-32 seq750 141 2e-28 seq1305 107 4e-18 >seq2696 Length=106704 Score = 154 bits (170), Expect = 3e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 ||| || |||| |||||| || | || || || || || ||||| || || || ||||| Sbjct 61812 ACCACCCCTCAGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 61753 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 ||| | | |||||||| || || || ||||||||||| | ||| ||||| || ||||| Sbjct 61752 GAGAGTGCGGCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAATCTCTGTTGGTCAGGAGG 61693 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 || ||||| ||||| || || || || || ||||||||||| || ||| | || || || Sbjct 61692 AATGCCTTCTTTATCCTGGATTTTGGCCTTGACATTTTCAATGGTGTCACTGGGCTCCAC 61633 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || || || || || ||||| ||||| ||||| |||||||| Sbjct 61632 CTCTAGGGTGATGGTTTTCCCGGTCAAGGTCTTCACAAAGATCTGCAT 61585 Score = 150 bits (166), Expect = 4e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || |||| |||||| || | || || || || || ||||| || || || ||||| Sbjct 61583 CCACCCCTCAGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAG 61524 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| | | |||||||| || || || ||||||||||| | ||| ||||| || ||||| Sbjct 61523 AGAGTGCGGCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAATCTCTGTTGGTCAGGAGGA 61464 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || ||||| ||||| || || || || || ||||| ||||| || ||| | || || || Sbjct 61463 ATGCCTTCTTTATCCTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACC 61404 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 || | || || || || || ||||| ||||| ||||| ||||||||| Sbjct 61403 TCTAGGGTGATGGTTTTCCCGGTCAAGGTCTTCACAAAGATCTGCATT 61356 Score = 149 bits (164), Expect = 1e-30 Identities = 168/225 (75%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 ||| || |||| |||||| || | || || || || || ||||| || || || ||||| Sbjct 62732 ACCACCCCTCAGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 62673 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 ||| | | |||||||| || || || ||||||||||| | ||| ||||| || ||||| Sbjct 62672 GAGAGTGCGGCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAATCTCTGTTGGTCAGGAGG 62613 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 || ||||| ||||| || || || || || ||||||||||| || ||| | || || || Sbjct 62612 AATGCCTTCTTTATCCTGGATTTTGGCCTTGACATTTTCAATGGTGTCACTGGGCTCCAC 62553 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTG 82807 || | || || || || || ||||| ||||| ||||| ||||| Sbjct 62552 CTCTAGGGTGATGGTTTTCCCGGTCAAGGTCTTCACAAAGATCTG 62508 >seq750 Length=573183 Score = 141 bits (156), Expect = 2e-28 Identities = 135/173 (78%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 60139 GATAGCCAGAGCATTATGGTGGTACTATATATCTAAAGGTATAGAATACTTAGATACGGT 60198 |||||| |||| |||||||||||||| ||||| ||||| || || || | || || | Sbjct 118276 GATAGCAGGAGCTTTATGGTGGTACTACATATCAAAAGGAATTGAGTATCTGGACACAAT 118217 Query 60199 GTTTTTCATACTTAGGAAAAAGTTTAATCAGGTTAGTTTTTTACACGTATATCATCATTT 60258 || ||||| || || || || ||||| || | |||||| | || || ||||| ||||| Sbjct 118216 ATTCTTCATCCTAAGAAAGAAATTTAACCAAATCAGTTTTCTTCATGTCTATCACCATTT 118157 Query 60259 TACTATGTTTACTTTAGGATGGGTAGGCATTAAATGGTTTGCCGGAGGTCAAG 60311 ||||||||||||||| | ||||| ||||| |||||| |||| ||||| |||| Sbjct 118156 CACTATGTTTACTTTATGGTGGGTTGGCATCAAATGGGTTGCAGGAGGACAAG 118104 Score = 89.7 bits (98), Expect = 1e-12 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 60443 CAATTCCATATAGCTATAGGACATACCGCTATGTCCATTTACATAGATTGTCCGTTTCCA 60502 || ||||| | |||| || || ||||| |||| ||||| || ||||| || ||||| Sbjct 113389 CAGTTCCACGTGACTATTGGCCACACCGCCCTGTCTATTTATATTGATTGCCCCTTTCCT 113330 Query 60503 AAATGGACACAATGGTCAGTTATCATTTATTCTATTACTTTTATATTACTGTTTGGTAAC 60562 ||||||| || ||| || || | ||| | | |||||||| | |||||||||||| Sbjct 113329 AAATGGATGCACTGGGGTGTCATTTTCTATGCCAGCACTTTTATTGTTCTGTTTGGTAAC 113270 Query 60563 TTCTATTTTAGAACATACAAGA 60584 ||||| | | | |||||||||| Sbjct 113269 TTCTACTATCGGACATACAAGA 113248 >seq1305 Length=349135 Score = 107 bits (118), Expect = 4e-18 Identities = 115/152 (76%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| |||| ||| || || | || ||||| || |||||||| || || || ||||| Sbjct 265706 CCTCCCCTCAGACGGAGGACAAGATGGAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAG 265647 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| | | || ||||||| || |||||||||||||| || || ||||| |||||||| Sbjct 265646 AGAGTGCGGCCATCTTCTAACTGCTTTCCAGCAAAGATCAGCCTCTGTTGGTCTGGAGGA 265587 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTAC 82735 || ||||| || || || || || || || || Sbjct 265586 ATGCCTTCTTTGTCCTGGATTTTGGCCTTCAC 265555 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981727443288270