Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thamnophis_20sirtalis_20[refseq_20GCF_5F001077635.1_202015-06-26] 7,930 sequences; 1,424,897,867 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq750 141 2e-28 >seq750 Length=573183 Score = 141 bits (156), Expect = 2e-28 Identities = 134/171 (78%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 58369 GATAGCCAGAGCATTATGGTGGTACTATATATCTAAAGGGATAGAATACTTAGATACAGT 58428 |||||| |||| |||||||||||||| ||||| ||||| || || || | || ||| | Sbjct 118276 GATAGCAGGAGCTTTATGGTGGTACTACATATCAAAAGGAATTGAGTATCTGGACACAAT 118217 Query 58429 GTTTTTCATACTTAGGAAAAAGTTTAATCATGTTAGCTTTCTACACGTATATCATCATTT 58488 || ||||| || || || || ||||| || | || ||||| || || ||||| ||||| Sbjct 118216 ATTCTTCATCCTAAGAAAGAAATTTAACCAAATCAGTTTTCTTCATGTCTATCACCATTT 118157 Query 58489 TACTATGTTTACTTTAGGATGGGTAGGTATTAAATGGTTTGCAGGAGGTCA 58539 ||||||||||||||| | ||||| || || |||||| |||||||||| || Sbjct 118156 CACTATGTTTACTTTATGGTGGGTTGGCATCAAATGGGTTGCAGGAGGACA 118106 Score = 98.7 bits (108), Expect = 2e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 58673 CAATTCCATATAGCTATAGGACATACCGCTATGTCCATTTACATAGATTGCCCGTTTCCA 58732 || ||||| | |||| || || ||||| |||| ||||| || |||||||| ||||| Sbjct 113389 CAGTTCCACGTGACTATTGGCCACACCGCCCTGTCTATTTATATTGATTGCCCCTTTCCT 113330 Query 58733 AAATGGACGCAATGGTCAGTTATCATCTATTCTATTACTTTTATATTATTGTTTGGTAAC 58792 ||||||| ||| ||| || || ||||| | | |||||||| | ||||||||||| Sbjct 113329 AAATGGATGCACTGGGGTGTCATTTTCTATGCCAGCACTTTTATTGTTCTGTTTGGTAAC 113270 Query 58793 TTCTATTTTAGAACATACAAGA 58814 ||||| | | | |||||||||| Sbjct 113269 TTCTACTATCGGACATACAAGA 113248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903321649364800