Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thamnophis_20sirtalis_20[refseq_20GCF_5F001077635.1_202015-06-26] 7,930 sequences; 1,424,897,867 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq2696 111 2e-19 seq1305 104 2e-17 seq79 87.8 2e-12 >seq2696 Length=106704 Score = 111 bits (122), Expect = 2e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTG 133516 ||| | ||||||||| ||||| || ||||| || | ||| ||| || ||||| Sbjct 61560 ATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGGCCGTCTTCCAGCTG 61501 Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 |||||| || | || | | ||| ||||| ||||| |||||||| || || ||| || Sbjct 61500 CTTGCCAGCAAAGATCAATCTCTGTTGGTCAGGAGGAATGCCTTCTTTATCCTGGATTTT 61441 Query 133577 TTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636 ||||| | ||||| ||||| |||||||||| || | ||||| |||||| ||||| Sbjct 61440 GGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACCTCTAGGGTGATGGTTTTCCCGGT 61381 Query 133637 CAGAGTTTTTACGAAAATCTGCAT 133660 || || || || || |||||||| Sbjct 61380 CAAGGTCTTCACAAAGATCTGCAT 61357 Score = 109 bits (120), Expect = 5e-19 Identities = 147/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTG 133516 ||| | ||||||||| ||||| || ||||| || | ||| ||| || ||||| Sbjct 61788 ATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGGCCGTCTTCCAGCTG 61729 Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 |||||| || | || | | ||| ||||| ||||| |||||||| || || ||| || Sbjct 61728 CTTGCCAGCAAAGATCAATCTCTGTTGGTCAGGAGGAATGCCTTCTTTATCCTGGATTTT 61669 Query 133577 TTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636 ||||| | |||| ||||| |||||||||| || | ||||| |||||| ||||| Sbjct 61668 GGCCTTGACATTTTCAATGGTGTCACTGGGCTCCACCTCTAGGGTGATGGTTTTCCCGGT 61609 Query 133637 CAGAGTTTTTACGAAAATCTGCATG 133661 || || || || || ||||||||| Sbjct 61608 CAAGGTCTTCACAAAGATCTGCATG 61584 Score = 102 bits (112), Expect = 8e-17 Identities = 143/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTG 133516 ||| | ||||||||| ||||| || ||||| || | ||| ||| || ||||| Sbjct 62708 ATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGGCCGTCTTCCAGCTG 62649 Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 |||||| || | || | | ||| ||||| ||||| |||||||| || || ||| || Sbjct 62648 CTTGCCAGCAAAGATCAATCTCTGTTGGTCAGGAGGAATGCCTTCTTTATCCTGGATTTT 62589 Query 133577 TTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636 ||||| | |||| ||||| |||||||||| || | ||||| |||||| ||||| Sbjct 62588 GGCCTTGACATTTTCAATGGTGTCACTGGGCTCCACCTCTAGGGTGATGGTTTTCCCGGT 62529 Query 133637 CAGAGTTTTTACGAAAATCTG 133657 || || || || || ||||| Sbjct 62528 CAAGGTCTTCACAAAGATCTG 62508 >seq1305 Length=349135 Score = 104 bits (114), Expect = 2e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 || || ||||||||||| || | || |||| ||| ||||| ||||| |||||||||||| Sbjct 275802 TCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGTTGGTCTGGAGGAATGCCTTCCTTG 275743 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || ||| || ||| | | ||||| ||||| | |||||||| || | ||||| | Sbjct 275742 TCCTGGATTTTGGCCTTCACATTCTCAATGGTGTCACTTGGCTCCACCTCCAGGGTGATG 275683 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 || ||||| |||| || || || || |||||||| Sbjct 275682 GTCTTGCCAGTCAATGTCTTCACAAAGATCTGCAT 275648 >seq79 Length=1654135 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 148492 CGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGCCAGTTCGCAGCTCGCCT 148551 |||||||||||| ||| | ||| || |||| | || || || | |||||| |||| Sbjct 1260455 CGGGGCTGCCCTGGTAGGTCTCGTAGGGCCCGTACTCCCGGGCGAGCTGGCAGCTGGCCT 1260396 Query 148552 CGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAGCAGCGCCGCCGACTCGC 148611 | || || | |||||| || |||||| || ||| |||||||||| ||| || Sbjct 1260395 CCAGGGCCCAGTAGTAGATGGTCTCGAAGATCTGCTGGTTGAGCAGCTGGGCCTCGGGGC 1260336 Query 148612 TTTCGTACGGCATACGCAGCCGCACAAACGCGTCGGCAAGGCCCTGTACGCCCACGCCAA 148671 | ||| | || | | || | | || |||||||| |||||||| || || | ||||| Sbjct 1260335 TCTCGAAGGGGAACCTCATGAGGATGAAGGCGTCGGCCAGGCCCTGCACCCCAATGCCAA 1260276 Query 148672 TGGGCCGGTGTTTAATGTTGGAG 148694 |||| ||||| |||||||| Sbjct 1260275 TGGGGCGGTGGCGCTTGTTGGAG 1260253 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483372880913200