Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thamnophis_20sirtalis_20[refseq_20GCF_5F001077635.1_202015-06-26] 7,930 sequences; 1,424,897,867 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq32 178 1e-39 >seq32 Length=1967196 Score = 178 bits (196), Expect = 1e-39 Identities = 606/937 (65%), Gaps = 17/937 (2%) Strand=Plus/Plus Query 162120 ATCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCGA 162179 ||| |||||||| || || | ||||| |||| || ||||| | | || || Sbjct 1079764 ATCAAACTTGTTGGCAAAAAAATGATGT---TTCTGTAACATCCAGCTCAAGTCTCCGAC 1079820 Query 162180 TCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCATC 162239 ||| || || || || || || || || || || |||| || || || | || || | Sbjct 1079821 TCCAAAGACACATACAGAACGGACATGAACTCCATTGCAAGGTGGGTAAGGAGCACCCTT 1079880 Query 162240 GTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGGA 162299 | ||||||||||| |||| | |||||| || |||| | | || | ||| ||||| Sbjct 1079881 GGATACATCCCCCTCAAAGTAATCCCACTTCACAAACCGGGCAACGGCATTCATATCGGA 1079940 Query 162300 GGTGTCGTACTTGTACACTGAC-GGCACGGCTCCAGGAACACCCGGCAGTCTCTGTAGAG 162358 ||||| |||| ||||| | | || || |||||||| | || | || ||| | | Sbjct 1079941 AACATCGTATTTGT-CACTGGCAGAGACTGCACCAGGAACTTCAGGGATTCGCTGGATTG 1079999 Query 162359 TAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGA 162418 ||||||| | || ||| || ||||| || || || || | ||| || || || | || Sbjct 1080000 TAGCCCATAAGTATTCATCAGGACTGTAAGTGTCTTTAGCCCATTCTATAAAAGCAAGGA 1080059 Query 162419 CCGTTTTATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTAC 162478 | | | | || | || || | ||| | |||| ||| || || || | Sbjct 1080060 TTTTGCTGTTCTCTAATACATATTCCACAAATTTCCTATTAACAACAAAATAGGCACTTC 1080119 Query 162479 CAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTACCA 162538 |||| || | ||||||| | ||| || ||| ||||||| ||| | || |||| Sbjct 1080120 CAGAGAAAATGGGTATGTTGAAAGGTGGATGCTGTTTGTCTATCCCCATTTTTTTTACCT 1080179 Query 162539 TTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAGACGG---GT 162595 | || || || || | | ||| ||||||| || |||| || | || || | Sbjct 1080180 TGCCATCAACTACTTCATAATGTTTCTTCCACCTCACC-TCTT--TGTTTGAAGGCATTT 1080236 Query 162596 GTTCGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGAT 162655 ||| || |||| ||| || ||| | ||| |||| || ||| |||||| ||| Sbjct 1080237 TTTCCGTTTCTAAACTATTTTCACCATTGAGGGCTTTCAACTTCTCCACAATCTCTTGAT 1080296 Query 162656 TGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTGA 162715 ||||||| | || || || |||| |||||||| || | || ||||| | || | Sbjct 1080297 TGGTCTTGATTGGGAAATCCATGCCACAGAGATTGATCAAGTACTTCCAGCTCACATTCC 1080356 Query 162716 GTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACA 162775 || ||| || |||| | ||||| || || || || || || ||||| || || |||| Sbjct 1080357 TTCTGTAGAGGTCCTTCATGCAGTTGAGGTCAGCTTGTACCCGGCTCCATGAGGCATACA 1080416 Query 162776 CGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCC---CCA 162832 | || || |||||| |||| || ||||||||| ||||| || | || | | Sbjct 1080417 CTACACTTTCCAACTGGCTGGCAACGAAGACATTGGGAAAACATGATGCAATGCTTTTTA 1080476 Query 162833 TCACGGCCAGTGAGAACATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCT 162892 | | |||| | || |||| | ||| | || || || | |||||| ||| | Sbjct 1080477 CCGCTGCCAAGAAAGACTCCGGG---GACTTCTTGTCAACATGAATGCAGTAATAATTTT 1080533 Query 162893 GAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGA 162952 |||| ||||| |||| ||||| | || ||| | ||| | || ||||| | |||| | Sbjct 1080534 GAGGAGCGTATATGGTTCTCAGAAGTCCCTCAAGCATATTAATTTTATGATAAGCCACTA 1080593 Query 162953 TAGAATACGCTATGGGGAACTCAGCCTCCTCGCGACTGAGAGACCCTGTAAAGTACTTGC 163012 | |||||||| ||||| || || || || || | ||||||| | ||| || || | Sbjct 1080594 TTGAATACGCAATGGGAAATTCTGCTTCTTCTTGGCTGAGAGGTTCCATAATATATTTCC 1080653 Query 163013 GGTCCCTCACAAACGCCGCACAGTCCTCCGTCATGTT 163049 | | | | | ||| | ||||| || | |||||||| Sbjct 1080654 GCTTCTTAATAAAGGAGGCACAATCAACTGTCATGTT 1080690 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578374662928000