Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thamnophis_20sirtalis_20[refseq_20GCF_5F001077635.1_202015-06-26] 7,930 sequences; 1,424,897,867 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq1856 179 5e-39 seq3994 165 1e-34 seq79 116 5e-20 >seq1856 Length=223512 Score = 179 bits (198), Expect = 5e-39 Identities = 179/231 (77%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 724912 TCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCA 724971 |||||||||| ||||| ||||| |||||| |||| |||| ||| |||| ||| Sbjct 175246 TCTACAAGGTCCTCAAACAGGTCCACCCCGACACCGG-----CATC-TCCTCCAAGGCCA 175193 Query 724972 TGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTC 725031 || ||||||||||| || ||||||||||| |||| ||||||| ||||||| | Sbjct 175192 TGAGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGCATCGCGGCCGAGGCTTCCC 175133 Query 725032 GCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGC 725091 ||||||| | || |||||||||| ||| ||| | | |||||||||||||| ||||||| Sbjct 175132 GCCTGGCCCACTACAACAAGCGCTCCACCATCACCTCCCGCGAGATCCAGACGGCCGTGC 175073 Query 725092 GCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 |||| | ||| |||||| ||||| | ||||||||||||||| || |||| Sbjct 175072 GCCTCCTGCTGCCCGGCGAGCTGGCTAAGCACGCCGTCTCCGAAGGGACCA 175022 >seq3994 Length=24899 Score = 165 bits (182), Expect = 1e-34 Identities = 176/231 (76%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 724912 TCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCA 724971 |||||||||| ||||||||||| |||||| |||| |||| ||| |||| ||| Sbjct 9098 TCTACAAGGTCCTCAAGCAGGTCCACCCCGACACCGG-----CATC-TCCTCCAAGGCCA 9151 Query 724972 TGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTC 725031 || ||||||| | | | ||||||||||| |||| ||||||| | ||||||| | Sbjct 9152 TGAGCATCATGACCCCCTCCGTCAACGACATCTTCGAGCGCATCGCCGCCGAGGCTTCCC 9211 Query 725032 GCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGC 725091 | ||||| | || |||||||||| ||| ||| | | |||||| ||||||| ||||| | Sbjct 9212 GACTGGCTCACTACAACAAGCGCTCCACCATCACCTCCCGCGAGGTCCAGACGGCCGTCC 9271 Query 725092 GCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 |||| || ||| || || || |||| ||||||||||||||||||||||| Sbjct 9272 GCCTCCTCCTGCCTGGGGAGCTCGCCAAGCACGCCGTCTCCGAGGGCACCA 9322 >seq79 Length=1654135 Score = 116 bits (128), Expect = 5e-20 Identities = 110/138 (80%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 262091 CAGATCTGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATGGTCTAC 262150 ||| |||||| ||||| ||| | |||| | ||||| || |||||||||||| ||||| Sbjct 1258151 CAGCTCTGGTACGCCATCATCGAGTCCCAGACGGAGACAGGGACGCCCTACATGCTCTAC 1258210 Query 262151 AAGGACGCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCACGACAGAG-GCCAA 262209 |||||| || ||||| || ||||||||||||||||||||||||| | || | ||| Sbjct 1258211 AAGGACTCCTGCAACCGGAAGAGCAACCAGCAGAACCTGGGCACCATCA-AGTGCAGCAA 1258269 Query 262210 CCTGTGCACCGAGATCGT 262227 ||| ||||||||||| || Sbjct 1258270 CCTCTGCACCGAGATTGT 1258287 Score = 91.5 bits (100), Expect = 2e-12 Identities = 82/103 (80%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 259970 TGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAG 260029 ||||| || || |||||||| ||| |||||||||||||| ||||| || ||||| Sbjct 1254814 TGCTTCCTCCTGTGCATGAAGGACGACAGCATCGAGGGCATCTACGACACCCTGAAGCAC 1254873 Query 260030 TGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCG 260072 |||||||||||||||||| | || || |||||||| | |||| Sbjct 1254874 TGCGCGCTCATCTCCAAGTCCGCGGGGGGCATCGGGGTGGCCG 1254916 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177046336924660