Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thamnophis_20sirtalis_20[refseq_20GCF_5F001077635.1_202015-06-26] 7,930 sequences; 1,424,897,867 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq2696 113 5e-20 >seq2696 Length=106704 Score = 113 bits (124), Expect = 5e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || || || |||| || || || || ||||| ||||| || ||||||||||| Sbjct 61583 CCACCCCTCAGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAG 61524 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | ||| || ||||| ||||| ||||| ||||| | ||| || || || || Sbjct 61523 AGAGTGCGGCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAATCTCTGTTGGTCAGGAGGA 61464 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||||||||| || || ||||| ||||| || | ||||| | ||||| Sbjct 61463 ATGCCTTCTTTATCCTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACC 61404 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTT 134716 || || || |||||||| ||||| || || || || || || |||||||| Sbjct 61403 TCTAGGGTGATGGTTTTCCCGGTCAAGGTCTTCACAAAGATCTGCATTTT 61354 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || || || |||| || || || || ||||| ||||| || ||||||||||| Sbjct 61811 CCACCCCTCAGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAG 61752 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | ||| || ||||| ||||| ||||| ||||| | ||| || || || || Sbjct 61751 AGAGTGCGGCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAATCTCTGTTGGTCAGGAGGA 61692 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||||||||| || || ||||| ||||| || | ||||| | ||||| Sbjct 61691 ATGCCTTCTTTATCCTGGATTTTGGCCTTGACATTTTCAATGGTGTCACTGGGCTCCACC 61632 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || |||||||| ||||| || || || || || || ||||| Sbjct 61631 TCTAGGGTGATGGTTTTCCCGGTCAAGGTCTTCACAAAGATCTGCAT 61585 Score = 102 bits (112), Expect = 8e-17 Identities = 157/224 (70%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || || || |||| || || || || ||||| ||||| || ||||||||||| Sbjct 62731 CCACCCCTCAGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAG 62672 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | ||| || ||||| ||||| ||||| ||||| | ||| || || || || Sbjct 62671 AGAGTGCGGCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAATCTCTGTTGGTCAGGAGGA 62612 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||||||||| || || ||||| ||||| || | ||||| | ||||| Sbjct 62611 ATGCCTTCTTTATCCTGGATTTTGGCCTTGACATTTTCAATGGTGTCACTGGGCTCCACC 62552 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTG 134710 || || || |||||||| ||||| || || || || || || || Sbjct 62551 TCTAGGGTGATGGTTTTCCCGGTCAAGGTCTTCACAAAGATCTG 62508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505348302383600