Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thamnophis_20sirtalis_20[refseq_20GCF_5F001077635.1_202015-06-26] 7,930 sequences; 1,424,897,867 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq2281 120 4e-22 seq1132 87.8 2e-12 seq898 84.2 3e-11 >seq2281 Length=154634 Score = 120 bits (132), Expect = 4e-22 Identities = 107/134 (80%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 39641 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTG 39700 |||||||| ||||| | |||||| || || || || || ||||||| || | ||| ||| Sbjct 5520 TCATCTCTGCTAATAAGTTCGTTGGAGAAAGTAAGGCCTGGCATTAACCCTCTCTTCTTG 5579 Query 39701 AGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCA 39760 |||||||||||||| ||||||| |||||||||||||| ||||| || || ||||| ||| Sbjct 5580 AGCCAAAATATGGCTGCAAAAGCACCAGAAAAGAAGATTCCTTCGACAGCAGCAAACGCA 5639 Query 39761 ACAAGTCTCTCTCC 39774 | | ||| || || Sbjct 5640 ATCACTCTTTCACC 5653 >seq1132 Length=407820 Score = 87.8 bits (96), Expect = 2e-12 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 39310 TGACATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCC 39369 ||||||||| ||||| |||| ||||| || || || || || || ||||| || ||||| Sbjct 174123 TGACATAACACCCATCCTTTGATATTCCCCTACACGCTTTTCAAAGAAATTTGTCTTGCC 174064 Query 39370 TTCCAATGATATATTTTCCATGAAATCAAACGGATT 39405 |||||| || ||||| ||||| || ||||| ||||| Sbjct 174063 TTCCAAAGAGATATTCTCCATAAAGTCAAATGGATT 174028 >seq898 Length=501174 Score = 84.2 bits (92), Expect = 3e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 39877 ATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGC 39936 ||| |||| || ||||| || | | |||||||||||||||||| ||||| || || || Sbjct 436002 ATCCTTAATGTAAGTATCAATGAGTAAACTATACATTTCTGAATGAATGTTCTCCATGGC 435943 Query 39937 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCT 39982 ||||| || || || ||||| | ||||| || |||||||| ||| Sbjct 435942 AATCTGGAAGCCATAGAAACAGCGGGCTTCTGTGATTTGTACTTCT 435897 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686840710165200