Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thamnophis_20sirtalis_20[refseq_20GCF_5F001077635.1_202015-06-26] 7,930 sequences; 1,424,897,867 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq1849 104 2e-17 seq1591 91.5 1e-13 seq1132 87.8 1e-12 >seq1849 Length=224522 Score = 104 bits (114), Expect = 2e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 41049 ATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGTCA 41108 ||||| || || || || ||| | || || |||||| ||| ||||||||||| || Sbjct 144797 ATGGCTTTACCTCCATGCCATGCTCTCTGCCAATTTTACATTTCAAATGGTGAACTCTCT 144738 Query 41109 TGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAGT 41168 ||||| |||||||| | || || ||||||||||| || || || || |||||||| ||| Sbjct 144737 TGTCAGTTGTATCAGCGTTCTGGAGACATGGGACTGGGAGTTCCTTTCAACATAGCTAGT 144678 Query 41169 TATGCTCTGCTCACGTATATGATTGCACACGTTAC 41203 || | || || || | |||||||| || ||||| Sbjct 144677 TACTCACTTCTTACTTCAATGATTGCCCATGTTAC 144643 >seq1591 Length=275930 Score = 91.5 bits (100), Expect = 1e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 43913 CAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAAT 43972 |||||||| || | |||||||| || ||||| ||||| || || || | |||||||| Sbjct 180482 CAAGAAGTGCAGATCCCAGAAGCTCGCTGTTTCTATGGCTTCCAGATATCAATAGAAAAC 180541 Query 43973 ATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 ||||||| || ||||||||| | | ||||| || |||||||||||| Sbjct 180542 GTTCATTCTGAGATGTACAGTTTGTTAATAGACACTTACATCAAAGAT 180589 >seq1132 Length=407820 Score = 87.8 bits (96), Expect = 1e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 44495 AACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAA 44554 || || ||||| |||||||| ||||| || ||||||||||| ||||| || |||||||| Sbjct 174028 AATCCATTTGACTTTATGGAGAATATCTCTTTGGAAGGCAAGACAAATTTCTTTGAAAAG 174087 Query 44555 CGCGTTGGAGAATATCAGCGAATGGGCGTCATG 44587 || || || |||||||| | ||||| || ||| Sbjct 174088 CGTGTAGGGGAATATCAAAGGATGGGTGTTATG 174120 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397417587119650