Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thamnophis_20sirtalis_20[refseq_20GCF_5F001077635.1_202015-06-26] 7,930 sequences; 1,424,897,867 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq79 98.7 1e-15 >seq79 Length=1654135 Score = 98.7 bits (108), Expect = 1e-15 Identities = 109/143 (76%), Gaps = 2/143 (1%) Strand=Plus/Minus Query 78221 CCTTCTTCCATCCGTACAGGTGCATACTCGACAGCTTGGCCAGACTCGGGTTCTCCA-TG 78279 ||| |||||| ||||| | ||||||||| | ||||||| || | | ||| || || || Sbjct 1264862 CCTGCTTCCAGCCGTAGAAGTGCATACTGGTCAGCTTG-CCGTAGTTGGGCTCCGCAATG 1264804 Query 78280 AAGATGTTGAGCGACTGGGACTGGTCGATGTACGCACCGCGGTCGGCCGCCATGTCGATG 78339 ||||||||| |||||| |||||||||| | || || |||||||||||||| | | | Sbjct 1264803 TGGATGTTGAGAGACTGGCTCTGGTCGATGAAGGCCCCCCGGTCGGCCGCCATCTTCAGG 1264744 Query 78340 ACCGACTTTTGCGGAATCTCCCA 78362 | | ||| |||| |||||||| Sbjct 1264743 ATGGTCTTCTGCGAGATCTCCCA 1264721 Score = 95.1 bits (104), Expect = 1e-14 Identities = 82/102 (80%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 19250 TCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGGCATCTACGAGACGCTC 19309 || ||||| ||||| || |||||||| |||||||| |||||||||||||| || || Sbjct 1254808 TCCAGCTGCTTCCTCCTGTGCATGAAGGACGACAGCATCGAGGGCATCTACGACACCCTG 1254867 Query 19310 AAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGGG 19351 ||| | ||||||| ||||||||||| | ||||| |||||| Sbjct 1254868 AAGCACTGCGCGCTCATCTCCAAGTCCGCGGGGGGCATCGGG 1254909 Score = 93.3 bits (102), Expect = 5e-14 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 79654 CCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCC 79713 ||||||||||| | ||||||||||| ||||||| | ||| || || |||||||||||| Sbjct 1254908 CCGATGCCCCCCGCGGACTTGGAGATGAGCGCGCAGTGCTTCAGGGTGTCGTAGATGCCC 1254849 Query 79714 TCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGA 79754 ||||| |||||||||||| | ||||||||||| || Sbjct 1254848 TCGATGCTGTCGTCCTTCATGCACAGGAGGAAGCAGCTGGA 1254808 Score = 93.3 bits (102), Expect = 5e-14 Identities = 68/79 (86%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 79127 ACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCGTCCTTGTAGCACA 79186 ||||||||||||| | ||||| ||||||||||||| ||| |||| |||||||||| || Sbjct 1258262 ACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCGGTTGCAGGAGTCCTTGTAGAGCA 1258203 Query 79187 TGTACGGCGTCCCGGTCTC 79205 |||| |||||||| ||||| Sbjct 1258202 TGTAGGGCGTCCCTGTCTC 1258184 Score = 91.5 bits (100), Expect = 2e-13 Identities = 125/175 (71%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 20602 GGATATCCCCCAGAACCTCAAGGACATTTACAGGACCGTATGGGAAATCCCACAGAAGAG 20661 ||| || ||| || || | ||| | | |||| ||| || ||||| ||| | ||||||| Sbjct 1264681 GGAGATTCCCGAGGACTTGAAGCAGCTCTACAAGACGGTGTGGGAGATCTCGCAGAAGAC 1264740 Query 20662 CATCATCGACATGGCGGCCGATCGCGGCGCCTACATCGACCAGTCCCAGTCGCTCAATGT 20721 |||| | | ||||||||||| || || |||| |||||||||| |||||| ||||| | Sbjct 1264741 CATCCTGAAGATGGCGGCCGACCGGGGGGCCTTCATCGACCAGAGCCAGTCTCTCAACAT 1264800 Query 20722 CTTCATGGAGAATCCGAGCCTGGCGAAGCTGAGCTCCATGCATATGTACGGCTGG 20776 | ||| | | | || | | | ||||||| | ||||| | ||||||||| Sbjct 1264801 CCACATTGCGGAGCCCAACTACGGCAAGCTGACCAGTATGCACTTCTACGGCTGG 1264855 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548470427479200