Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thamnophis_20sirtalis_20[refseq_20GCF_5F001077635.1_202015-06-26] 7,930 sequences; 1,424,897,867 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq2717 86.0 7e-12 seq73 86.0 7e-12 seq79 82.4 8e-11 >seq2717 Length=103560 Score = 86.0 bits (94), Expect = 7e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 |||||||||||||||| ||||||||||||||||||||| ||| | ||||| || || Sbjct 94340 GTGAAAATGTAACGAGGACTTGCAGCATCCTTGCCACCATGAAGTCTAGTACCAAACTGA 94281 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | |||| | | | | | || || || ||||| || |||||||| |||||| Sbjct 94280 CCAATAGGCTGTAGCAAGCTGACATTATTACTTCCAACAAAATTCTGAGCCAAATTGACA 94221 Query 117425 ATCGT 117429 || || Sbjct 94220 ATTGT 94216 >seq73 Length=1862180 Score = 86.0 bits (94), Expect = 7e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 || ||||| |||| | ||| || || || || ||||| ||||| ||||||||||| Sbjct 687608 GTAAAGATATATCTAGGGCTTGCAGCGTCTTTCCCACCATGCAGCCTGGTTCCAAACTGA 687549 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| ||| | || | ||| ||||||||| |||||| ||||| ||||||||||| | | Sbjct 687548 CCAATGGGTTGAAGTAAGTTCAGGTTGTTGCTGCCCACAAAATTTTGAGCCAAATTAATA 687489 Query 152149 ATCGT 152153 || || Sbjct 687488 ATAGT 687484 >seq79 Length=1654135 Score = 82.4 bits (90), Expect = 8e-11 Identities = 98/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 53830 GGTCAAGGCGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCC 53889 ||| ||||| | || | ||| | || ||| || || |||| |||||| || ||||| Sbjct 1258138 GGTGAAGGCCCAGCAGCTCTGGTACGCCATCATCGAGTCCCAGACGGAGACAGGGACGCC 1258197 Query 53890 GTACATGTGCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGGCGTCAT 53949 |||||| ||||||||| || |||| ||||||||||||| ||||| | ||| ||| Sbjct 1258198 CTACATGCTCTACAAGGACTCCTGCAACCGGAAGAGCAACCAGCAGAACCTGGGCACCAT 1258257 Query 53950 CAAATCGAGCAAC 53962 ||| | |||||| Sbjct 1258258 CAAGTGCAGCAAC 1258270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547161757214000