Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thamnophis_20sirtalis_20[refseq_20GCF_5F001077635.1_202015-06-26] 7,930 sequences; 1,424,897,867 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq1305 149 7e-31 seq3172 91.5 2e-13 seq520 87.8 2e-12 >seq1305 Length=349135 Score = 149 bits (164), Expect = 7e-31 Identities = 141/180 (78%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| |||||||| ||||| | || |||||||| || || || ||||| ||| || | Sbjct 275647 AATGCAGATCTTTGTGAAGACATTGACTGGCAAGACCATCACCCTGGAGGTGGAGCCAAG 275706 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | ||||| ||| ||||||| ||||| ||||||||||| || |||||||||||||| Sbjct 275707 TGACACCATTGAGAATGTGAAGGCCAAAATCCAGGACAAGGAAGGCATTCCTCCAGACCA 275766 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||| | || || ||||| || ||||| || || |||| || ||||| | ||||| || Sbjct 275767 ACAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAA 275826 Score = 113 bits (124), Expect = 5e-20 Identities = 110/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 27482 TGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTG 27541 ||||||| ||||| |||||||| || || |||||||||||||| ||| | || || |||| Sbjct 265556 TGAAGGCCAAAATCCAGGACAAAGAAGGCATTCCTCCAGACCAACAGAGGCTGATCTTTG 265615 Query 27542 CTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCA 27601 |||| ||||| | || |||| || || || | ||||| || |||| || || |||| Sbjct 265616 CTGGAAAGCAGTTAGAAGATGGCCGCACTCTCTCTGACTACAACATCCAGAAAGAGTCCA 265675 Query 27602 CTCTTCATCTAGTCTTGCGTCT 27623 |||| ||||| ||| | ||||| Sbjct 265676 CTCTCCATCTTGTCCTCCGTCT 265697 >seq3172 Length=68839 Score = 91.5 bits (100), Expect = 2e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| || ||||| || || || || ||||| || || || |||||||| ||| || | Sbjct 26795 AATGCAGATTTTTGTGAAAACCCTCACTGGCAAAACCATCACCCTTGAGGTGGAGCCAAG 26854 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509 ||| | |||| |||| | ||||| ||||||||||||||||| || Sbjct 26855 TGACACAATTGAAAATGTCAAGGCAAAAATTCAGGACAAGGAAGG 26899 >seq520 Length=716008 Score = 87.8 bits (96), Expect = 2e-12 Identities = 74/91 (81%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 ||||||||||| ||||| |||||| ||||||||||||| || ||| | ||||||| ||| Sbjct 122032 GGAATTCCTCCTGACCAACAGCGTTTAATTTTTGCTGGCAAACAATTGGAGGATGGACGT 122091 Query 27568 ACCCTAGCAGACTATAATGTCCAAAAGGAAT 27598 || || | || ||||| ||||||||| || Sbjct 122092 ACTCTGTCTGATTATAACATCCAAAAGGTAT 122122 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570253867981600