Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thamnophis_20sirtalis_20[refseq_20GCF_5F001077635.1_202015-06-26] 7,930 sequences; 1,424,897,867 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq74 221 2e-52 >seq74 Length=1667982 Score = 221 bits (244), Expect = 2e-52 Identities = 618/938 (66%), Gaps = 38/938 (4%) Strand=Plus/Plus Query 13673 CCTGAGCCTGGAAGAGGTCGAG---TTTCCCATCGCCTACTCGATCGTGATCCACCACAA 13729 ||||||| ||||||| ||| || |||||||| || || || ||| ||||| | || Sbjct 1605923 CCTGAGC---GAAGAGGAAGAGAACTTCCCCATCGCTTATTCCATGGTGGTCCACGAGAA 1605979 Query 13730 GATCGAGATGTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGT 13789 |||||||||||| || | |||||||| ||||||| || || |||||| | ||||| || Sbjct 1605980 GATCGAGATGTTTGAAAGGCTCCTGAGAGCCATCTTTGCTCCTCAGAACGTTTACTGTGT 1606039 Query 13790 CCACGTGGACTCCAAGTCCGGCGACGAGTTCATCCGGGGCGTCTCGGCCATCGCCAGGTG 13849 |||||||||| |||||| ||| ||| || |||| |||||||||| || Sbjct 1606040 CCACGTGGACAGCAAGTCTCCCGAACCTTTCCAAAAGGCCGTCCGGGCCATCGCCTCCTG 1606099 Query 13850 CTTCCCTAACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGTCG 13909 |||| ||||| |||||| || | | |||||||||| ||| ||| | Sbjct 1606100 CTTCGACAACGTTTTCCTGGCTTTTAAGCAGGAGAGTGTGGTGTACGCCTCTTGGTCGAG 1606159 Query 13910 CGTGCAGGCCGACCTCAGCTGCATGTCGGACCTGGACGCCTC----CCCCGTCAAGTGGA 13965 || || |||||||| | ||||||| |||||| || || | ||| |||| Sbjct 1606160 GGTCCAAGCCGACCTGAACTGCATGAAGGACCT----GCTTCAAAGCAAGGTCCGCTGGA 1606215 Query 13966 GGTACCTGCTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGC 14025 |||||||||| ||| ||||||| |||||||| ||||||||||| ||||||||| | Sbjct 1606216 GGTACCTGCTGAACACCTGCGGGACCGACTTCCCCATCAAGACCAACACGGAGATCGTCC 1606275 Query 14026 GGGCGCTGAAGGCCCTGGGCGGCAAGAACGCCCTGGAGAGCGAGGGCATGCC--CAACC- 14082 |||| ||||| || ||| |||||| | |||| |||| | || | || Sbjct 1606276 GGGCCCTGAAACTGCTCAACGGGAAGAACAACATGGAATCCGAG---AAACCTTCGTCCT 1606332 Query 14083 ACAAGCTGCACCGCATCAGGAAGAGGCACGTGGTGGCCAGCGGCGGCGTGGTGGTCAACA 14142 | || | ||||| | | |||| ||| ||| | | ||| || | | Sbjct 1606333 ATAAAAGGAACCGCTGGAAATACCACCACGAAGTGACCAACACCATCGT-----TC-AGA 1606386 Query 14143 CCGGCAGGAACAAGGCCCCGCCGCCGCTCAGGATCCCCATCTTTGCGGGAAACGCTTACT 14202 || | || |||| ||| ||||| | ||| |||||| || |||| ||||| ||| Sbjct 1606387 CCAAGACGACAAAGGGCCCCCCGCCCCACAGCTCCCCCATGTTCACGGGCAACGCCTACA 1606446 Query 14203 TTGCGGTCACCCGGGAGTTCGTGGACTTCGTCCT-CAAGGACGAGCCG-GTGGCCCTGCT 14260 | | |||| ||||||| ||| | | || | |||| | | ||| ||| || | Sbjct 1606447 TCATAGCCACCAGGGAGTTTGTGCAGCACCTCTTCCAAGACCCAACCGCCAGGCGCT--T 1606504 Query 14261 CATGCACTGGTTCGAGGACACGTACAGCCCCGACGAGCACCTGTGGGCCACCGTGCAGAG 14320 || | |||| | | ||||| ||||||||||| ||||| || ||||||||| |||| | Sbjct 1606505 GATAGAGTGGTCCAAAGACACCTACAGCCCCGATGAGCATCTTTGGGCCACCTTGCACCG 1606564 Query 14321 AATGTACGGGACGCCCGGGGGGATCCCCGTTCACGTCAAGTACGACACCTCGGACATGTG 14380 ||| ||| |||||| | |||| | | | ||| | ||| | |||||||| Sbjct 1606565 CATGCCAGGGGTGCCCGGCTCGGTCCCTTATAATGACAAATTCGATCTCACGGACATGAA 1606624 Query 14381 GGCCAAGGTCAGGTTCGTCAAGTGGCACTACTACGAGGGGGATATCAAGAAAGGGGCCCT 14440 |||| | | || | || |||||| |||| ||| ||||| ||| || || |||| Sbjct 1606625 CGCCATTGCCCGGGTGGTGAAGTGGGCCTACAGCGAAGGGGACGTCAGCAAGGGAGCCCC 1606684 Query 14441 GTACCCGCCTTGCGACGGCATCCACGTCCACGCCATCTGCATCTTCGGGTCCGGCGACGT 14500 ||||| | ||| ||| || || | || ||||| ||| |||| || ||| | Sbjct 1606685 TTACCCCCAGTGCACCGGAGTCTACCGGCGGGCGGTCTGCGTCTATGGGTTTGGGGACCT 1606744 Query 14501 GAAGTGGCTG----AAGAGCGTCCCGCACCTGTTCGCCAACAAGTTCGACGACGAGACGG 14556 |||||| | || | ||||| |||||||||||||||||| | || Sbjct 1606745 CCGCTGGCTGCTCTCACAG----CACCACCTCTTCGCCAACAAGTTCGACCCCAGCGTGG 1606800 Query 14557 ACGAGTTCGCCGTGCGCTGTCTGGACGAGGACGTGCGC 14594 || | | |||| | | || ||||| ||| | ||||| Sbjct 1606801 ACAACTGCGCCCTCCAATGCCTGGAAGAGTATCTGCGC 1606838 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658673902476800