Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thamnophis_20sirtalis_20[refseq_20GCF_5F001077635.1_202015-06-26] 7,930 sequences; 1,424,897,867 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq2696 127 2e-24 >seq2696 Length=106704 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || ||||||| || | || || || || ||||| || Sbjct 61357 ATGCAGATCTTTGTGAAGACCTTGACCGGGAAAACCATCACCCTAGAGGTGGAGCCCAGT 61416 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| ||||| ||||| || || ||||||||||| || || || ||| Sbjct 61417 GACACCATTGAGAATGTCAAGGCCAAAATCCAGGATAAAGAAGGCATTCCTCCTGACCAA 61476 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | || ||||| || |||||||| | || | || || |||||| Sbjct 61477 CAGAGATTGATCTTTGCTGGCAAGCAGCTGGAAGACGGCCGCACTCTCTCTGACTACAAC 61536 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||| ||| | ||| | || ||||| || |||||||||| Sbjct 61537 ATCCAGAAGGAGTCCACCCTCCATCTTGTCCTGCGTCTGAGGGGTGGCAT 61586 Score = 118 bits (130), Expect = 9e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| || || ||||||| || | || || || || ||||| || Sbjct 61584 CATGCAGATCTTTGTGAAGACCTTGACCGGGAAAACCATCACCCTAGAGGTGGAGCCCAG 61643 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | ||||| | ||||| ||||| || || ||||||||||| || || || || Sbjct 61644 TGACACCATTGAAAATGTCAAGGCCAAAATCCAGGATAAAGAAGGCATTCCTCCTGACCA 61703 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||| | || || | || ||||| || |||||||| | || | || || ||||| Sbjct 61704 ACAGAGATTGATCTTTGCTGGCAAGCAGCTGGAAGACGGCCGCACTCTCTCTGACTACAA 61763 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||| || |||||||| ||| | ||| | || ||||| || ||||||| Sbjct 61764 CATCCAGAAGGAGTCCACCCTCCATCTTGTCCTGCGTCTGAGGGGTGG 61811 Score = 111 bits (122), Expect = 1e-19 Identities = 159/224 (71%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 26991 CAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGAC 27050 ||||| ||||| || || ||||||| || | || || || || ||||| || ||| Sbjct 62508 CAGATCTTTGTGAAGACCTTGACCGGGAAAACCATCACCCTAGAGGTGGAGCCCAGTGAC 62567 Query 27051 TCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAG 27110 | ||||| | ||||| ||||| || || ||||||||||| || || || |||||| Sbjct 62568 ACCATTGAAAATGTCAAGGCCAAAATCCAGGATAAAGAAGGCATTCCTCCTGACCAACAG 62627 Query 27111 CGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATT 27170 | || || | || ||||| || |||||||| | || | || || |||||||| Sbjct 62628 AGATTGATCTTTGCTGGCAAGCAGCTGGAAGACGGCCGCACTCTCTCTGACTACAACATC 62687 Query 27171 CAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || |||||||| ||| | ||| | || ||||| || ||||||| Sbjct 62688 CAGAAGGAGTCCACCCTCCATCTTGTCCTGCGTCTGAGGGGTGG 62731 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434875288713600