Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thamnophis_20sirtalis_20[refseq_20GCF_5F001077635.1_202015-06-26] 7,930 sequences; 1,424,897,867 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq1849 98.7 9e-16 >seq1849 Length=224522 Score = 98.7 bits (108), Expect = 9e-16 Identities = 113/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 6617 ACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAAC 6676 ||||| || ||||| | || || || | ||||||||| |||||||| || || || | Sbjct 144646 ACATGGGCAATCATTGAAGTAAGAAGTGAGTAACTAGCTATGTTGAAAGGAACTCCCAGT 144705 Query 6677 CCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAAT 6736 ||||||||||| || || ||||| | ||| || || || || ||||| | | ||| ||| Sbjct 144706 CCCATGTCTCCAGAACGCTGATACAACTGACAAGAGAGTTCACCATTTGAAATGTAAAAT 144765 Query 6737 TGGCAGAGGGTGTGGCACGGGGGGAGCGCCAT 6768 |||||||| | ||||| || || | ||||| Sbjct 144766 TGGCAGAGAGCATGGCATGGAGGTAAAGCCAT 144797 Score = 98.7 bits (108), Expect = 9e-16 Identities = 113/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 34577 ATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTGTCC 34636 ||||| | || || ||||| | ||||||||||| ||| | | ||||| || || || Sbjct 144797 ATGGCTTTACCTCCATGCCATGCTCTCTGCCAATTTTACATTTCAAATGGTGAACTCTCT 144738 Query 34637 TGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAGT 34696 || ||| | ||||| || || ||||||||||| | || || || |||||||| |||||| Sbjct 144737 TGTCAGTTGTATCAGCGTTCTGGAGACATGGGACTGGGAGTTCCTTTCAACATAGCTAGT 144678 Query 34697 TACGCTCTGCTCACGTACATGATCGCTCATGT 34728 ||| | || || || | ||||| || ||||| Sbjct 144677 TACTCACTTCTTACTTCAATGATTGCCCATGT 144646 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448217965989600