Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thamnophis_20sirtalis_20[refseq_20GCF_5F001077635.1_202015-06-26] 7,930 sequences; 1,424,897,867 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq2696 149 1e-30 seq1305 138 3e-27 >seq2696 Length=106704 Score = 149 bits (164), Expect = 1e-30 Identities = 162/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 |||||||| || || |||||||| || |||||||| || || | || || | || ||| Sbjct 61568 AGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGGCCGTCT 61509 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| | | |||||||||||||||| ||||| || ||| Sbjct 61508 TCCAGCTGCTTGCCAGCAAAGATCAATCTCTGTTGGTCAGGAGGAATGCCTTCTTTATCC 61449 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||| || || || || || ||||||||| | || ||||| || ||||| || Sbjct 61448 TGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACCTCTAGGGTGATGGTT 61389 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || || | ||||| ||||| | ||||||||| Sbjct 61388 TTCCCGGTCAAGGTCTTCACAAAGATCTGCATTTT 61354 Score = 149 bits (164), Expect = 1e-30 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 |||||||| || || |||||||| || |||||||| || || | || || | || ||| Sbjct 61796 AGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGGCCGTCT 61737 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| | | |||||||||||||||| ||||| || ||| Sbjct 61736 TCCAGCTGCTTGCCAGCAAAGATCAATCTCTGTTGGTCAGGAGGAATGCCTTCTTTATCC 61677 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||| || || || ||||| ||||||||| | || ||||| || ||||| || Sbjct 61676 TGGATTTTGGCCTTGACATTTTCAATGGTGTCACTGGGCTCCACCTCTAGGGTGATGGTT 61617 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || | ||||| ||||| | |||||| Sbjct 61616 TTCCCGGTCAAGGTCTTCACAAAGATCTGCAT 61585 Score = 143 bits (158), Expect = 6e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 |||||||| || || |||||||| || |||||||| || || | || || | || ||| Sbjct 62716 AGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGGCCGTCT 62657 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| | | |||||||||||||||| ||||| || ||| Sbjct 62656 TCCAGCTGCTTGCCAGCAAAGATCAATCTCTGTTGGTCAGGAGGAATGCCTTCTTTATCC 62597 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||| || || || ||||| ||||||||| | || ||||| || ||||| || Sbjct 62596 TGGATTTTGGCCTTGACATTTTCAATGGTGTCACTGGGCTCCACCTCTAGGGTGATGGTT 62537 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTG 211111 || || || | ||||| ||||| | ||| Sbjct 62536 TTCCCGGTCAAGGTCTTCACAAAGATCTG 62508 >seq1305 Length=349135 Score = 138 bits (152), Expect = 3e-27 Identities = 135/173 (78%), Gaps = 6/173 (3%) Strand=Plus/Minus Query 210948 AGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGA 211007 ||||| | |||||||||||||||||||| || ||||| || | |||||||| |||||| Sbjct 275814 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGTTGGTCTGGAGGA 275755 Query 211008 ACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTT---TCA 211064 | ||||||||||||||||| || ||||| || || ||||||||| ||| || Sbjct 275754 ATGCCTTCCTTGTCCTGGATTTTGGCCTTCACATTCTCAATGGTGTCA---CTTGGCTCC 275698 Query 211065 ACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 ||||| || ||||| ||||| || || | ||||| ||||| | ||||||||| Sbjct 275697 ACCTCCAGGGTGATGGTCTTGCCAGTCAATGTCTTCACAAAGATCTGCATTTT 275645 Score = 114 bits (126), Expect = 3e-20 Identities = 102/128 (80%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 |||||||| || |||||||||||||| |||||||| || || | || || | |||||| Sbjct 265691 AGGACAAGATGGAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCT 265632 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || | |||||| || || ||||| || | |||||||| ||||||| ||||| |||||| Sbjct 265631 TCTAACTGCTTTCCAGCAAAGATCAGCCTCTGTTGGTCTGGAGGAATGCCTTCTTTGTCC 265572 Query 211023 TGGATCTT 211030 ||||| || Sbjct 265571 TGGATTTT 265564 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159034226534450