Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thamnophis_20sirtalis_20[refseq_20GCF_5F001077635.1_202015-06-26] 7,930 sequences; 1,424,897,867 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq2696 107 1e-18 >seq2696 Length=106704 Score = 107 bits (118), Expect = 1e-18 Identities = 146/201 (73%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||| || || || ||| | || || ||||| ||||| || || || || || Sbjct 61354 AAAATGCAGATCTTTGTGAAGACCTTGACCGGGAAAACCATCACCCTAGAGGTGGAGCCC 61413 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||||| |||| ||| | || | ||||| || |||||||| | || || || Sbjct 61414 AGTGACACCATTGAGAATGTCAAGGC-CAAAATCCAGGATAAAGAAGGCATTCCTCCTGA 61472 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 |||||| | || || ||||| ||||| || |||||||||| |||||| | || || Sbjct 61473 CCAACAGAGATTGATCTTTGCTGGCAAGCAGCTGGAAGACGGCCGCACTCTCTCTGACTA 61532 Query 23787 CAACATACAAAAAGAGTCCAC 23807 |||||| || || |||||||| Sbjct 61533 CAACATCCAGAAGGAGTCCAC 61553 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337976932428440