Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thamnophis_20sirtalis_20[refseq_20GCF_5F001077635.1_202015-06-26]
7,930 sequences; 1,424,897,867 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq1305 118 3e-21
>seq1305
Length=349135
Score = 118 bits (130), Expect = 3e-21
Identities = 110/140 (79%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
|||||||| ||||||||||| ||||| |||| ||||| || | | ||| | ||||||
Sbjct 265691 AGGACAAGATGGAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCT 265632
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|||| |||||| ||||| ||||| || | |||||||| || ||||| ||||| |||||
Sbjct 265631 TCTAACTGCTTTCCAGCAAAGATCAGCCTCTGTTGGTCTGGAGGAATGCCTTCTTTGTCC 265572
Query 225622 TGGATCTTTTGCTTCACAGC 225641
||||| || |||||| ||
Sbjct 265571 TGGATTTTGGCCTTCACNGC 265552
Score = 113 bits (124), Expect = 1e-19
Identities = 134/182 (74%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 225535 TTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGT 225594
||||| |||| | || | |||||||| |||||||| || || ||||| || | |||
Sbjct 275826 TTGTAGTCGGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGT 275767
Query 225595 TGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCT 225654
||||| || ||||| ||||||||||| ||||| || ||||||| || ||||||||
Sbjct 275766 TGGTCTGGAGGAATGCCTTCCTTGTCCTGGATTTTGGCCTTCACATTCTCAATGGTGTCA 275707
Query 225655 GAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714
| ||||| || | ||||| |||||||| ||||| || || | || | ||||||
Sbjct 275706 CTTGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAATGTCTTCACAAAGATCTGCATT 275647
Query 225715 TT 225716
||
Sbjct 275646 TT 275645
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1192410035103420
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |