Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thamnophis_20sirtalis_20[refseq_20GCF_5F001077635.1_202015-06-26] 7,930 sequences; 1,424,897,867 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq1132 104 3e-17 seq2281 102 1e-16 seq898 86.0 9e-12 seq79 86.0 9e-12 >seq1132 Length=407820 Score = 104 bits (114), Expect = 3e-17 Identities = 80/95 (84%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 47835 GACATAACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCT 47894 |||||||| ||||| |||||||||| || ||||| || || || ||||| || |||||| Sbjct 174122 GACATAACACCCATCCTTTGATATTCCCCTACACGCTTTTCAAAGAAATTTGTCTTGCCT 174063 Query 47895 TCCAATGATATATTTTCCATAAAATCAAATGGATT 47929 ||||| || ||||| |||||||| ||||||||||| Sbjct 174062 TCCAAAGAGATATTCTCCATAAAGTCAAATGGATT 174028 >seq2281 Length=154634 Score = 102 bits (112), Expect = 1e-16 Identities = 95/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 48163 CTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTT 48222 |||||||||| ||||| | |||||| || || || || || ||||||| || | || | Sbjct 5518 CTTCATCTCTGCTAATAAGTTCGTTGGAGAAAGTAAGGCCTGGCATTAACCCTCTCTTCT 5577 Query 48223 TGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATG 48282 ||||||||||||| || || |||| ||||||||||| || ||||| || || ||||| | Sbjct 5578 TGAGCCAAAATATGGCTGCAAAAGCACCAGAAAAGAAGATTCCTTCGACAGCAGCAAACG 5637 Query 48283 C 48283 | Sbjct 5638 C 5638 >seq898 Length=501174 Score = 86.0 bits (94), Expect = 9e-12 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 48401 ATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGC 48460 ||| |||| ||||||||| || | | |||||||||||| || ||||| || || || || Sbjct 436002 ATCCTTAATGTAAGTATCAATGAGTAAACTATACATTTCTGAATGAATGTTCTCCATGGC 435943 Query 48461 CATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTC 48505 ||||| || || || ||||| | ||||||||||| ||||| || Sbjct 435942 AATCTGGAAGCCATAGAAACAGCGGGCTTCTGTGATTTGTACTTC 435898 >seq79 Length=1654135 Score = 86.0 bits (94), Expect = 9e-12 Identities = 97/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 77733 ATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTA 77792 |||||||| || || || || || ||||| |||||||| || || ||||||||||| Sbjct 1258284 ATCTCGGTGCAGAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCGG 1258225 Query 77793 TTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAATA 77852 ||||| |||||||| || || || | || ||||| || || |||| || ||||| || Sbjct 1258224 TTGCAGGAGTCCTTGTAGAGCATGTAGGGCGTCCCTGTCTCCGTCTGGGACTCGATGATG 1258165 Query 77853 GATTTCCAGA 77862 | | ||||| Sbjct 1258164 GCGTACCAGA 1258155 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694599940955200