Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thamnophis_20sirtalis_20[refseq_20GCF_5F001077635.1_202015-06-26]
7,930 sequences; 1,424,897,867 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq1132 104 3e-17
seq2281 102 1e-16
seq898 86.0 9e-12
seq79 86.0 9e-12
>seq1132
Length=407820
Score = 104 bits (114), Expect = 3e-17
Identities = 80/95 (84%), Gaps = 0/95 (0%)
Strand=Plus/Minus
Query 47835 GACATAACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCT 47894
|||||||| ||||| |||||||||| || ||||| || || || ||||| || ||||||
Sbjct 174122 GACATAACACCCATCCTTTGATATTCCCCTACACGCTTTTCAAAGAAATTTGTCTTGCCT 174063
Query 47895 TCCAATGATATATTTTCCATAAAATCAAATGGATT 47929
||||| || ||||| |||||||| |||||||||||
Sbjct 174062 TCCAAAGAGATATTCTCCATAAAGTCAAATGGATT 174028
>seq2281
Length=154634
Score = 102 bits (112), Expect = 1e-16
Identities = 95/121 (79%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 48163 CTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTT 48222
|||||||||| ||||| | |||||| || || || || || ||||||| || | || |
Sbjct 5518 CTTCATCTCTGCTAATAAGTTCGTTGGAGAAAGTAAGGCCTGGCATTAACCCTCTCTTCT 5577
Query 48223 TGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATG 48282
||||||||||||| || || |||| ||||||||||| || ||||| || || ||||| |
Sbjct 5578 TGAGCCAAAATATGGCTGCAAAAGCACCAGAAAAGAAGATTCCTTCGACAGCAGCAAACG 5637
Query 48283 C 48283
|
Sbjct 5638 C 5638
>seq898
Length=501174
Score = 86.0 bits (94), Expect = 9e-12
Identities = 82/105 (78%), Gaps = 0/105 (0%)
Strand=Plus/Minus
Query 48401 ATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGC 48460
||| |||| ||||||||| || | | |||||||||||| || ||||| || || || ||
Sbjct 436002 ATCCTTAATGTAAGTATCAATGAGTAAACTATACATTTCTGAATGAATGTTCTCCATGGC 435943
Query 48461 CATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTC 48505
||||| || || || ||||| | ||||||||||| ||||| ||
Sbjct 435942 AATCTGGAAGCCATAGAAACAGCGGGCTTCTGTGATTTGTACTTC 435898
>seq79
Length=1654135
Score = 86.0 bits (94), Expect = 9e-12
Identities = 97/130 (75%), Gaps = 0/130 (0%)
Strand=Plus/Minus
Query 77733 ATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTA 77792
|||||||| || || || || || ||||| |||||||| || || |||||||||||
Sbjct 1258284 ATCTCGGTGCAGAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCGG 1258225
Query 77793 TTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAATA 77852
||||| |||||||| || || || | || ||||| || || |||| || ||||| ||
Sbjct 1258224 TTGCAGGAGTCCTTGTAGAGCATGTAGGGCGTCCCTGTCTCCGTCTGGGACTCGATGATG 1258165
Query 77853 GATTTCCAGA 77862
| | |||||
Sbjct 1258164 GCGTACCAGA 1258155
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694599940955200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |