Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thamnophis_20sirtalis_20[refseq_20GCF_5F001077635.1_202015-06-26] 7,930 sequences; 1,424,897,867 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq2696 105 2e-17 seq1305 98.7 2e-15 >seq2696 Length=106704 Score = 105 bits (116), Expect = 2e-17 Identities = 155/218 (71%), Gaps = 6/218 (3%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||||||||| || || ||||| || ||||||||||| || | | ||| | || ||| Sbjct 61568 AGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGGCCGTCT 61509 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || ||||| | ||||| ||||| | | || ||||| || || Sbjct 61508 TCCAGCTGCTTGCCAGCAAAGATCAATCTCTGTTGGTCAGGAGGAATGCCTTCTTTATCC 61449 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || ||||| |||||| |||| | | |||| ||| ||| || || || || || Sbjct 61448 TGGATTTTGGCCTTGACATTCTCAATGGTGTC---ACTGGGCTCCACCTCTAGGGTGATG 61392 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 ||||| || || | |||||||| |||| ||||||||| Sbjct 61391 GTTTTCCCGGTCAAGGTCTTCACAAAGATCTGCATTTT 61354 Score = 96.9 bits (106), Expect = 8e-15 Identities = 151/215 (70%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||||||||| || || ||||| || ||||||||||| || | | ||| | || ||| Sbjct 61796 AGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGGCCGTCT 61737 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || ||||| | ||||| ||||| | | || ||||| || || Sbjct 61736 TCCAGCTGCTTGCCAGCAAAGATCAATCTCTGTTGGTCAGGAGGAATGCCTTCTTTATCC 61677 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || ||||| |||||| | || | | |||| ||| ||| || || || || || Sbjct 61676 TGGATTTTGGCCTTGACATTTTCAATGGTGTC---ACTGGGCTCCACCTCTAGGGTGATG 61620 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || || | |||||||| |||| |||||| Sbjct 61619 GTTTTCCCGGTCAAGGTCTTCACAAAGATCTGCAT 61585 Score = 91.5 bits (100), Expect = 3e-13 Identities = 148/212 (70%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||||||||| || || ||||| || ||||||||||| || | | ||| | || ||| Sbjct 62716 AGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGGCCGTCT 62657 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || ||||| | ||||| ||||| | | || ||||| || || Sbjct 62656 TCCAGCTGCTTGCCAGCAAAGATCAATCTCTGTTGGTCAGGAGGAATGCCTTCTTTATCC 62597 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || ||||| |||||| | || | | |||| ||| ||| || || || || || Sbjct 62596 TGGATTTTGGCCTTGACATTTTCAATGGTGTC---ACTGGGCTCCACCTCTAGGGTGATG 62540 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTG 152101 ||||| || || | |||||||| |||| ||| Sbjct 62539 GTTTTCCCGGTCAAGGTCTTCACAAAGATCTG 62508 >seq1305 Length=349135 Score = 98.7 bits (108), Expect = 2e-15 Identities = 107/140 (76%), Gaps = 4/140 (3%) Strand=Plus/Minus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 ||| || | |||||||||||| ||||| |||||||| ||||||||||| || | | ||| Sbjct 265701 CCTCAGACGGAGGACAAGATGGAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAGAGAGT 265642 Query 151943 TCTCCCATCTTCTA--GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATT 152000 | |||||||||| ||||| || || ||||| |||||||| ||||| | | || Sbjct 265641 GCGGCCATCTTCTAACTGCTTT--CCAGCAAAGATCAGCCTCTGTTGGTCTGGAGGAATG 265584 Query 152001 CCTTCCTTTTCTTGAATTTT 152020 ||||| || || || ||||| Sbjct 265583 CCTTCTTTGTCCTGGATTTT 265564 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153703568201030