Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thamnophis_20sirtalis_20[refseq_20GCF_5F001077635.1_202015-06-26] 7,930 sequences; 1,424,897,867 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq2696 138 2e-27 seq1305 122 2e-22 seq3994 89.7 1e-12 seq1856 89.7 1e-12 seq113 89.7 1e-12 >seq2696 Length=106704 Score = 138 bits (152), Expect = 2e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| | ||| || || || ||||| | ||| || || |||||||||||||||| Sbjct 61583 CCACCCCTCAGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAG 61524 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || |||||||| || || || || || || ||||||||||| | ||||||||| ||| Sbjct 61523 AGAGTGCGGCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAATCTCTGTTGGTCAGGAGGA 61464 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || || || || ||||| || || || || | || || ||||| | || || Sbjct 61463 ATGCCTTCTTTATCCTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACC 61404 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTTC 283103 || || ||||| || || || ||||| ||||| || || |||||||||||| Sbjct 61403 TCTAGGGTGATGGTTTTCCCGGTCAAGGTCTTCACAAAGATCTGCATTTTC 61353 Score = 134 bits (148), Expect = 3e-26 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 282871 AACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG 282930 ||||||| | ||| || || || ||||| | ||| || || |||||||||||||||| Sbjct 61813 AACCACCCCTCAGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAG 61754 Query 282931 CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCG 282990 || |||||||| || || || || || || ||||||||||| | ||||||||| | Sbjct 61753 AGAGAGTGCGGCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAATCTCTGTTGGTCAGGAG 61694 Query 282991 GAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 |||| || || || || ||||| || || || || | || || ||||| | || | Sbjct 61693 GAATGCCTTCTTTATCCTGGATTTTGGCCTTGACATTTTCAATGGTGTCACTGGGCTCCA 61634 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 | || || ||||| || || || ||||| ||||| || || |||||||| Sbjct 61633 CCTCTAGGGTGATGGTTTTCCCGGTCAAGGTCTTCACAAAGATCTGCAT 61585 Score = 129 bits (142), Expect = 1e-24 Identities = 164/226 (73%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 282871 AACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG 282930 ||||||| | ||| || || || ||||| | ||| || || |||||||||||||||| Sbjct 62733 AACCACCCCTCAGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAG 62674 Query 282931 CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCG 282990 || |||||||| || || || || || || ||||||||||| | ||||||||| | Sbjct 62673 AGAGAGTGCGGCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAATCTCTGTTGGTCAGGAG 62614 Query 282991 GAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 |||| || || || || ||||| || || || || | || || ||||| | || | Sbjct 62613 GAATGCCTTCTTTATCCTGGATTTTGGCCTTGACATTTTCAATGGTGTCACTGGGCTCCA 62554 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTG 283096 | || || ||||| || || || ||||| ||||| || || ||||| Sbjct 62553 CCTCTAGGGTGATGGTTTTCCCGGTCAAGGTCTTCACAAAGATCTG 62508 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 57751 TTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 57809 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 59421 TTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 59479 >seq1305 Length=349135 Score = 122 bits (134), Expect = 2e-22 Identities = 136/182 (75%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 282921 TTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGT 282980 |||||||| | || ||||||||||| || || || || ||||||||||||| | ||| Sbjct 275826 TTGTAGTCGGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGT 275767 Query 282981 TGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCC 283040 ||||| ||||| || |||||||| ||||| || || || || | || || ||||| Sbjct 275766 TGGTCTGGAGGAATGCCTTCCTTGTCCTGGATTTTGGCCTTCACATTCTCAATGGTGTCA 275707 Query 283041 GAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 | || || || || ||||| ||||| || ||||| ||||| || || ||||||||| Sbjct 275706 CTTGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAATGTCTTCACAAAGATCTGCATT 275647 Query 283101 TT 283102 || Sbjct 275646 TT 275645 Score = 98.7 bits (108), Expect = 2e-15 Identities = 113/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || | ||| || || || ||||| | ||| ||||| |||||||||||||||| Sbjct 265706 CCTCCCCTCAGACGGAGGACAAGATGGAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAG 265647 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || ||||||||||| |||| || || || |||||||||| | |||||||| ||| Sbjct 265646 AGAGTGCGGCCATCTTCTAACTGCTTTCCAGCAAAGATCAGCCTCTGTTGGTCTGGAGGA 265587 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTAC 283024 || || || ||||| ||||| || || || || Sbjct 265586 ATGCCTTCTTTGTCCTGGATTTTGGCCTTCAC 265555 >seq3994 Length=24899 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 19522 TTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 19580 >seq1856 Length=223512 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 154604 TTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 154662 >seq113 Length=1446452 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 310875 TTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 310933 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 1378958 TTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 1378900 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046632848026220