Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thamnophis_20sirtalis_20[refseq_20GCF_5F001077635.1_202015-06-26] 7,930 sequences; 1,424,897,867 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq1132 109 6e-19 seq898 89.7 5e-13 seq2281 87.8 2e-12 >seq1132 Length=407820 Score = 109 bits (120), Expect = 6e-19 Identities = 110/142 (77%), Gaps = 6/142 (4%) Strand=Plus/Minus Query 23159 TTTAAAAATCTTCATCTAAAGTGAAT---TTCACTGCTTTATCACTATTCATAACACCCA 23215 |||| |||||| | || |||||||| || |||| | ||| ||||||||||| Sbjct 174166 TTTAGAAATCTGCGTCCAAAGTGAACGAGTTATCTGC---AGAACTTGACATAACACCCA 174110 Query 23216 TTTTTTGATATTCCCCAACACGTCTTTCGAAAAAATTTGTCTTACCCTCTAATGATATAT 23275 | ||||||||||||| ||||| |||| || ||||||||||| || || || || |||| Sbjct 174109 TCCTTTGATATTCCCCTACACGCTTTTCAAAGAAATTTGTCTTGCCTTCCAAAGAGATAT 174050 Query 23276 TTTCCATAAAATCAAATGGATT 23297 | |||||||| ||||||||||| Sbjct 174049 TCTCCATAAAGTCAAATGGATT 174028 >seq898 Length=501174 Score = 89.7 bits (98), Expect = 5e-13 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 23763 TTCTTCATTATCTGTTATATATGTATCAATTAGTAAACTATACATTTCAGAATGAATATT 23822 ||||| | ||| | || || |||||||| ||||||||||||||||| |||||||| || Sbjct 436011 TTCTTTAGAATCCTTAATGTAAGTATCAATGAGTAAACTATACATTTCTGAATGAATGTT 435952 Query 23823 TTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTC 23861 || || |||||||| || ||||| ||||| | ||||| Sbjct 435951 CTCCATGGCAATCTGGAAGCCATAGAAACAGCGGGCTTC 435913 >seq2281 Length=154634 Score = 87.8 bits (96), Expect = 2e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 23531 CTTCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTT 23590 ||||||| || ||||| | ||| || || || || | ||||||||||| |||| || | Sbjct 5518 CTTCATCTCTGCTAATAAGTTCGTTGGAGAAAGTAAGGCCTGGCATTAACCCTCTCTTCT 5577 Query 23591 TAATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGG 23650 | | ||||||||| || ||||| | || |||||||| || || || ||||| ||||| | Sbjct 5578 TGAGCCAAAATATGGCTGCAAAAGCACCAGAAAAGAAGATTCCTTCGACAGCAGCAAACG 5637 Query 23651 C 23651 | Sbjct 5638 C 5638 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521436307502000