Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thamnophis_20sirtalis_20[refseq_20GCF_5F001077635.1_202015-06-26] 7,930 sequences; 1,424,897,867 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq457 136 6e-27 >seq457 Length=778413 Score = 136 bits (150), Expect = 6e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 9256 GTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGAACATCGCACACC 9315 ||||| |||||| |||| ||| ||||||||| ||||| ||| |||| || || ||| Sbjct 759886 GTCTGAAACAGTCGCTCATCATCCCATTCTGGGTGTTCGCCTTTAAGAATGTCACAGACC 759945 Query 9316 CTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGTACCAGGCCAAAA 9375 | || ||||||| |||||| | ||||| |||||||| ||||| || |||| |||||| Sbjct 759946 CGATTATGTTCCCGGAGCCACAACGTGGCATACATCATCAGCCCTGGAACCAAGCCAAAG 760005 Query 9376 GCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9435 |||| || || |||| | || | || || || | ||| ||||||||||| | Sbjct 760006 ACCTCCTGTCCTACAGAAAATTTCAGATGGTCAGGGACGTGGGGTGGATAGATCATTTCT 760065 Query 9436 ACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATCTG 9485 |||| ||||| || | || ||||||||||| || |||||||||| Sbjct 760066 GCCTGAGTTTCTTTCACAGTAGGTGGATACATTTCCCCAGCAATCATCTG 760115 Score = 96.9 bits (106), Expect = 5e-15 Identities = 194/285 (68%), Gaps = 2/285 (1%) Strand=Plus/Plus Query 8303 GGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATCCCG 8362 || || ||||| |||||| | || || || |||| | || | || || || | Sbjct 737646 GGGCAGCCCTTCACGTTGTTGCAAACGAGGCTTTGAAGTGAGGCTGTATTCACAATGTCA 737705 Query 8363 AACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTC 8422 || ||||| | || || || || || ||||||||||| | || |||||||||||||| Sbjct 737706 AAGCCCACTGCGCCTCCAAAAGTACTTGGCTTCCAGTATTCAGGTGAGCAGATGACGTTT 737765 Query 8423 GCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATG 8482 | | || ||||| | |||||| |||||||| | || | ||| |||| || |||||| Sbjct 737766 CCTAGAAGACCTTTCAAGGAGAAGGGAGCCCCGAGTTCAATCATGGTCTCGCCAAAGATG 737825 Query 8483 GCGTTGGGACGGGGCTTTTCCACCA-AGAATCCGGTGTACAGCTCCACAGCCTCGACGTC 8541 || || || || ||||| | | | | |||| ||| | |||| ||| || | || Sbjct 737826 GCTCCAGGGCGTGGTTTTTCAATGAGAAGAGCCGG-GTATAATTCCATAGCATCAATATC 737884 Query 8542 TCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTGT 8586 ||| || || | ||||| |||| || || ||||| ||||| Sbjct 737885 TCCATAGAGCTCTTCAAGTTCTCCAGCCATTTCTTTTTCACCTGT 737929 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716805739587200