Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thamnophis_20sirtalis_20[refseq_20GCF_5F001077635.1_202015-06-26]
7,930 sequences; 1,424,897,867 total letters
Query= NC_033176.1
Length=224064
Score E
Sequences producing significant alignments: (Bits) Value
seq457 136 6e-27
>seq457
Length=778413
Score = 136 bits (150), Expect = 6e-27
Identities = 168/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 9256 GTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGAACATCGCACACC 9315
||||| |||||| |||| ||| ||||||||| ||||| ||| |||| || || |||
Sbjct 759886 GTCTGAAACAGTCGCTCATCATCCCATTCTGGGTGTTCGCCTTTAAGAATGTCACAGACC 759945
Query 9316 CTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGTACCAGGCCAAAA 9375
| || ||||||| |||||| | ||||| |||||||| ||||| || |||| ||||||
Sbjct 759946 CGATTATGTTCCCGGAGCCACAACGTGGCATACATCATCAGCCCTGGAACCAAGCCAAAG 760005
Query 9376 GCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9435
|||| || || |||| | || | || || || | ||| ||||||||||| |
Sbjct 760006 ACCTCCTGTCCTACAGAAAATTTCAGATGGTCAGGGACGTGGGGTGGATAGATCATTTCT 760065
Query 9436 ACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATCTG 9485
|||| ||||| || | || ||||||||||| || ||||||||||
Sbjct 760066 GCCTGAGTTTCTTTCACAGTAGGTGGATACATTTCCCCAGCAATCATCTG 760115
Score = 96.9 bits (106), Expect = 5e-15
Identities = 194/285 (68%), Gaps = 2/285 (1%)
Strand=Plus/Plus
Query 8303 GGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATCCCG 8362
|| || ||||| |||||| | || || || |||| | || | || || || |
Sbjct 737646 GGGCAGCCCTTCACGTTGTTGCAAACGAGGCTTTGAAGTGAGGCTGTATTCACAATGTCA 737705
Query 8363 AACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTC 8422
|| ||||| | || || || || || ||||||||||| | || ||||||||||||||
Sbjct 737706 AAGCCCACTGCGCCTCCAAAAGTACTTGGCTTCCAGTATTCAGGTGAGCAGATGACGTTT 737765
Query 8423 GCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATG 8482
| | || ||||| | |||||| |||||||| | || | ||| |||| || ||||||
Sbjct 737766 CCTAGAAGACCTTTCAAGGAGAAGGGAGCCCCGAGTTCAATCATGGTCTCGCCAAAGATG 737825
Query 8483 GCGTTGGGACGGGGCTTTTCCACCA-AGAATCCGGTGTACAGCTCCACAGCCTCGACGTC 8541
|| || || || ||||| | | | | |||| ||| | |||| ||| || | ||
Sbjct 737826 GCTCCAGGGCGTGGTTTTTCAATGAGAAGAGCCGG-GTATAATTCCATAGCATCAATATC 737884
Query 8542 TCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTGT 8586
||| || || | ||||| |||| || || ||||| |||||
Sbjct 737885 TCCATAGAGCTCTTCAAGTTCTCCAGCCATTTCTTTTTCACCTGT 737929
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 716805739587200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |