Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thamnophis_20sirtalis_20[refseq_20GCF_5F001077635.1_202015-06-26] 7,930 sequences; 1,424,897,867 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq1305 95.1 3e-14 >seq1305 Length=349135 Score = 95.1 bits (104), Expect = 3e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 || || |||||||||||||| || ||||| ||||| || | || ||||| || ||||| Sbjct 265564 AAAATCCAGGACAAAGAAGGCATTCCTCCAGACCAACAGAGGCTGATCTTTGCTGGAAAG 265623 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 ||| | |||||||| | ||||| | || || ||| |||| ||||| || || || ||| Sbjct 265624 CAGTTAGAAGATGGCCGCACTCTCTCTGACTACAACATCCAGAAAGAGTCCACTCTCCAT 265683 Query 178125 CTTGT 178129 ||||| Sbjct 265684 CTTGT 265688 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203608897148420