Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vipera_20berus_20berus_20[genbank_20GCA_5F000800605.1_202014-12-10] 28,883 sequences; 1,532,390,814 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq25602 87.8 1e-12 seq24478 86.0 5e-12 >seq25602 Length=68118 Score = 87.8 bits (96), Expect = 1e-12 Identities = 108/148 (73%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 102033 CTTTATATTCTGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTT 102092 |||| || || ||||| ||||| |||||||| || ||||| | ||| || | ||||||| Sbjct 7381 CTTTGTACTCGGCTCCAAAATGTCTCCACTGGAAGCCATAAATAGGACCTAAGTCTCCTT 7322 Query 102093 CATCTCTGTCATAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAA 102152 | ||||| |||| || |||| ||||| ||| | ||| ||||| |||||||||| Sbjct 7321 CCTCTCTAGAGAAAAATCCCTGTTTGTCTAAGAATTGCCGAGAACCATTGGCATCCCAAA 7262 Query 102153 TGTGCACGCCAGCTGCTGATAGCTCTTT 102180 | | || || || || |||||||| Sbjct 7261 TCTTAACTCCCTTAGCAGAAAGCTCTTT 7234 >seq24478 Length=79782 Score = 86.0 bits (94), Expect = 5e-12 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349 ||||| ||| || || || || |||||||||||| ||||||||| || | |||||||| Sbjct 71719 CTTTAATTCTTTACTAAGTACTACATTAATTCTGTTTTTTAAAGGACGATGTTTCTCAGG 71660 Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTT 4394 || |||||||| ||||| ||||||| || || | ||| || || Sbjct 71659 GATGGAGAACCAGGTCTTCCTACCCATTATGACCACATTTTGCTT 71615 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361124035400633