Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vipera_20berus_20berus_20[genbank_20GCA_5F000800605.1_202014-12-10] 28,883 sequences; 1,532,390,814 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq10558 123 3e-23 seq5028 102 1e-16 seq25428 93.3 5e-14 >seq10558 Length=413728 Score = 123 bits (136), Expect = 3e-23 Identities = 100/121 (83%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||| ||||||||||| | || || ||||| || |||||||||||||| || || || | Sbjct 114603 CCTCATCTCTACTAATCAGCTCATTAGAAAAAGTAAGTCCGGGCATTAGACCTCGTTTCT 114544 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | ||||||||||| || ||||| || ||||||||||| |||||||| ||||| ||||| | Sbjct 114543 TTAGCCAAAATATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCAACTGCAGCAAATG 114484 Query 24277 C 24277 | Sbjct 114483 C 114483 Score = 98.7 bits (108), Expect = 1e-15 Identities = 72/84 (86%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 24632 CACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATG 24691 ||| |||||| ||||||| ||||| |||||||| || || ||||| | |||||||||||| Sbjct 105911 CACCTCTTCCGCTGTCCAGAATGACGCCTCTGCTTTCTTGTACATTTGCCAGATGTCATG 105852 Query 24692 ATATTGAATTGGAAAAATAACAAA 24715 |||||||| |||||||| ||||| Sbjct 105851 GTATTGAATAGGAAAAATGACAAA 105828 Score = 86.0 bits (94), Expect = 7e-12 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 24386 TTCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTT 24445 ||| ||| ||| |||| || |||||||| | | |||||||||||| ||||||||||| Sbjct 112727 TTCTTTAGAATCCTTAATGTAAGTATCAATAAGTAAACTATACATTTCTGAATGAATGTT 112668 Query 24446 TTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT 24500 || ||||| || || || || |||||||| | || || || | ||||||||| Sbjct 112667 CTCCATGGCAATCTGGAAGCCATAGAAACAGCGTGCTTCTGTGACTTGTACTTCT 112613 >seq5028 Length=21598 Score = 102 bits (112), Expect = 1e-16 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 24159 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 24218 || ||||| ||||| | ||| ||||| || || || || ||||||| || | ||| || Sbjct 4568 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTAAGGCCTGGCATTAACCCTCTCTTCTTG 4509 Query 24219 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCA 24278 ||||||||||||| ||||| | ||||| ||||| |||||||| || || ||||| ||| Sbjct 4508 AGCCAAAATATGGCTGCAAAAGCACCAGAGAAGAAGATTCCTTCGACAGCAGCAAACGCA 4449 Query 24279 ATAAGTCTTTCTCC 24292 | | |||||| || Sbjct 4448 ACCACTCTTTCACC 4435 >seq25428 Length=70394 Score = 93.3 bits (102), Expect = 5e-14 Identities = 125/174 (72%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 54768 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 54827 ||||||| | || || ||||||||||| ||||| || || || || | ||||| || | Sbjct 25356 CACTAAAGACCTTCTTCGTTTCTTTGTGCAGATTGGAGACAGCGATCCGTGCGGCCAGGA 25415 Query 54828 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCA 54887 |||| || || || | | || || ||||||||| | || || | ||| ||||||| Sbjct 25416 TGGCGTAGTCAGGGTACTTGGTGGTGAGAGTGGCTGCCGTCTCAGCCGCCAGCGTGTCCA 25475 Query 54888 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCATAGCTATTT 54941 ||| ||||| || || ||| | || | || ||||| |||||||| | |||| Sbjct 25476 GTTCGACCGTGGTCACCCCACTGTAGAGGCCCTGGATCACCTTCATGGTGATTT 25529 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593507244237840