Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vipera_20berus_20berus_20[genbank_20GCA_5F000800605.1_202014-12-10] 28,883 sequences; 1,532,390,814 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq25442 104 2e-17 seq27101 84.2 2e-11 >seq25442 Length=71287 Score = 104 bits (114), Expect = 2e-17 Identities = 143/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 ||||||||||| || ||||| ||||| | || || || | || |||||||||||||| Sbjct 26940 GTGGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCTTCCAGCTGTTTGCCA 26881 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| | || || ||||||||||| || | ||||||||| || |||||| || Sbjct 26880 GCAAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCCTTATCCTGGATCTTGGCCTTG 26821 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | | || || | ||||||| || | ||| ||||| || || || || || Sbjct 26820 ACGTTCTCAATGGTGTCGCTGGGCTCCACCTCTAGGGTGATGGTTTTCCCAGTCAAGGTC 26761 Query 21159 TTGACAAATATTTGCATTTT 21178 || ||||| || |||||||| Sbjct 26760 TTCACAAAGATCTGCATTTT 26741 >seq27101 Length=56424 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||| ||| | ||| || | ||| | ||||||||| || || ||||| ||||| | Sbjct 16201 CCTCCTCTCAGACGGAGAACAAGATGGAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAG 16142 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || | || |||||||| ||||| || | || || ||||||||||| || Sbjct 16141 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCGGGAGGA 16082 Query 21069 ACGCCTTCCTTGTC 21082 | ||||||||| || Sbjct 16081 ATGCCTTCCTTATC 16068 Score = 82.4 bits (90), Expect = 6e-11 Identities = 113/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 21021 TCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTG 21080 || |||||||| ||||| ||| | || || ||||||||||| ||| | ||||||||| Sbjct 14642 TCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTA 14583 Query 21081 TCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATG 21140 || |||||| || || | | | || || | ||||||| |||| || ||| Sbjct 14582 TCTTGGATCTTAGCCTTGACATTCTCAATGGTGTCGCTGGGCTCCACCTCCAGAGTGATG 14523 Query 21141 GTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTT 21178 ||||| || || || || || ||||| || |||||||| Sbjct 14522 GTCTTCCCAGTCAAGGTCTTCACAAAGATCTGCATTTT 14485 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422110559879228