Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vipera_20berus_20berus_20[genbank_20GCA_5F000800605.1_202014-12-10] 28,883 sequences; 1,532,390,814 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq25442 123 3e-23 seq27101 95.1 1e-14 >seq25442 Length=71287 Score = 123 bits (136), Expect = 3e-23 Identities = 155/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 |||||||| || || || || || | || || |||||||||||| | || || || || Sbjct 26741 AAAATGCAGATCTTTGTGAAGACCTTGACTGGGAAAACCATCACCCTAGAGGTGGAGCCC 26800 Query 40747 ACCGACAGC-GTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | ||||| | || |||| |||||| || || | || || || ||||| || | || Sbjct 26801 AGCGACACCATTGAGAACG-TCAAGGCCAAGATCCAGGATAAGGAAGGCATTCCTCCTGA 26859 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| | || |||| || |||||||||||||| || | ||||| ||| ||||| Sbjct 26860 CCAGCAGAGGCTGATCTTTGCTGGCAAACAGCTGGAAGATGGCCGCACTCTCTCTGACTA 26919 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCT 40895 |||||||||||||||| |||| || || || Sbjct 26920 CAACATCCAGAAGGAGTCCACCCTCCACCT 26949 >seq27101 Length=56424 Score = 95.1 bits (104), Expect = 1e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 || || || ||||| || | |||||||| | || |||| ||| ||||| |||||||| Sbjct 16068 GATAAGGAAGGCATTCCTCCCGACCAGCAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAA 16127 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 || | ||||||||| ||||||||||||||||| ||| |||| || ||||| || | Sbjct 16128 GATGGCCGCACCCTCTCTGACTACAACATCCAGAAAGAGTCCACTCTCCATCTTGTTCTC 16187 Query 40903 CGCTTGAGGGGCGGC 40917 || |||| || ||| Sbjct 16188 CGTCTGAGAGGAGGC 16202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515033186548080