Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vipera_20berus_20berus_20[genbank_20GCA_5F000800605.1_202014-12-10] 28,883 sequences; 1,532,390,814 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq5893 147 4e-30 >seq5893 Length=194688 Score = 147 bits (162), Expect = 4e-30 Identities = 135/171 (79%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 51885 GATAGCCAGAGCATTATGGTTGTACTATATATCCAAAGGGATAGAATACTTGGATACGGT 51944 |||||| |||| ||||||| |||||| |||||||||||||| || || |||| || | Sbjct 56691 GATAGCAGGAGCTTTATGGTGGTACTACATATCCAAAGGGATTGAGTATCTGGACACAAT 56750 Query 51945 ATTTTTCATACTTAGGAAAAAATTTAATCAGGTTAGTTTTCTACACGTATATCATCATTT 52004 ||| ||||| || || || ||||| ||||| | || ||||| ||||| ||||| ||||| Sbjct 56751 ATTCTTCATCCTAAGAAAGAAATTCAATCAAATCAGCTTTCTTCACGTCTATCACCATTT 56810 Query 52005 TACTATGTTTACTCTAGGATGGATAGGTATTAAATGGTTTGCTGGAGGTCA 52055 |||||||||||| || | ||||| || || || ||| |||| ||||| || Sbjct 56811 CACTATGTTTACTTTATGGTGGATTGGCATAAAGTGGGTTGCAGGAGGACA 56861 Score = 116 bits (128), Expect = 7e-21 Identities = 111/142 (78%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 52189 CAGTTCCATATAGCTATAGGACATACTGCTATGTCCATTTACATAGATTGCCCGTTTCCA 52248 ||||||||| | |||| || || ||||| ||||| ||||| || |||||||| ||||| Sbjct 61040 CAGTTCCATGTGACTATTGGCCACACTGCCATGTCTATTTATATTGATTGCCCCTTTCCT 61099 Query 52249 AAATGGATACAGTGGTCAGTTATTATCTATTCTATTAGTTTCATATTACTGTTTGGTAAC 52308 |||||||| || ||| || ||| ||||| | | | |||||| | |||||||||||| Sbjct 61100 AAATGGATGCATTGGGGTGTCATTTTCTATGCCACCACTTTCATTGTTCTGTTTGGTAAC 61159 Query 52309 TTCTATTTTAGAACATACAAGA 52330 ||||| | | | |||||||||| Sbjct 61160 TTCTACTATCGGACATACAAGA 61181 Score = 104 bits (114), Expect = 4e-17 Identities = 102/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 52057 GCATTTTTTGGAGCTCAGCTAAATTCTTTTATCCATGTTATTATGTACACTTATTATGGT 52116 ||||||||||||||||| | ||| |||| || |||||| |||||||| |||||||| Sbjct 58640 GCATTTTTTGGAGCTCATATGAATGCTTTCATTCATGTTGTTATGTACCTCTATTATGGA 58699 Query 52117 ATGGCCGCTTGTGGTCCTATGTTCAGAAAGTATCTATGGTGGAAACGTTATCTTACTATA 52176 | || || ||||| || | |||| ||||| || ||||||||||| || | || ||| Sbjct 58700 CTAGCTGCCTGTGGCCCAAAGTTCCACAAGTACCTTTGGTGGAAACGATACTTGACCATA 58759 Query 52177 ATGCAGTTGGTA 52188 ||||| || ||| Sbjct 58760 ATGCAATTAGTA 58771 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 922863491335320