Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vipera_20berus_20berus_20[genbank_20GCA_5F000800605.1_202014-12-10] 28,883 sequences; 1,532,390,814 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq10558 122 8e-23 seq5028 102 8e-17 >seq10558 Length=413728 Score = 122 bits (134), Expect = 8e-23 Identities = 116/147 (79%), Gaps = 1/147 (1%) Strand=Plus/Minus Query 16246 ACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAG 16305 |||| || || | || || ||||| || | ||| || ||||| ||||| || |||||||| Sbjct 114613 ACAA-GCCATACCTCATCTCTACTAATCAGCTCATTAGAAAAAGTAAGTCCGGGCATTAG 114555 Query 16306 TCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAAC 16365 |||||||| || | ||||||||| | ||||| || ||||||||||| || |||||||| Sbjct 114554 ACCTCGTTTCTTTAGCCAAAATATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCAAC 114495 Query 16366 TGCGGCAAATGCAACCAATCGCTCACC 16392 ||| |||||||| || | || ||||| Sbjct 114494 TGCAGCAAATGCTACTATACGTTCACC 114468 Score = 102 bits (112), Expect = 8e-17 Identities = 82/99 (83%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 16504 AATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTG 16563 ||| |||||||| || |||||||||||||||||||||||||| |||||||| || ||||| Sbjct 112712 AATGTAAGTATCAATAAGTAAACTATACATTTCTGAATGAATGTTCTCCATGGCAATCTG 112653 Query 16564 AAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTC 16602 || ||||| || || | ||||| | | ||||||||| Sbjct 112652 GAAGCCATAGAAACAGCGTGCTTCTGTGACTTGTACTTC 112614 >seq5028 Length=21598 Score = 102 bits (112), Expect = 8e-17 Identities = 106/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 15890 AAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTTTTTGA 15949 || ||| ||||| || ||| || |||| ||| | |||||||||| | | |||| Sbjct 8528 AAGTCAGCATCTAAAGTAAATACCTTATTATTTGCTTGGGACATAACTGCAAAATGTTGA 8469 Query 15950 TATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTCCATA 16009 ||||| ||||||| | ||||||||||| ||||||||||| | ||||| |||||||| Sbjct 8468 TATTCTGAAACTCTCCTCTCAAAGAAATTGGTTTTTCCTTCCAGGGAAATGTTTTCCATG 8409 Query 16010 AAATCAAAAGGATTTTTTG 16028 || |||||||| |||| || Sbjct 8408 AAGTCAAAAGGGTTTTCTG 8390 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462345015823800