Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vipera_20berus_20berus_20[genbank_20GCA_5F000800605.1_202014-12-10]
28,883 sequences; 1,532,390,814 total letters
Query= NC_002665.1
Length=108873
Score E
Sequences producing significant alignments: (Bits) Value
seq1 414 7e-111
seq11981 116 3e-21
>seq1
Length=2584131
Score = 414 bits (458), Expect = 7e-111
Identities = 695/1000 (70%), Gaps = 14/1000 (1%)
Strand=Plus/Plus
Query 107628 TACCTCAACATAACCAGAGACTGTGAGCGCTTCAAGGCCCAAAGGAAGTTCATACAGTTC 107687
||||| ||| ||||| || ||| || ||| || | | || | ||||| ||||
Sbjct 1458049 TACCTGAACGCAACCAAGGATTGTCAGAACTTTAAAGAAGAGAGAAGATTCATTGGGTTC 1458108
Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747
| |||||| |||| || | ||||||| ||||| || || |||||| |||| |||||
Sbjct 1458109 CACCTGAGTGAAGAGGAAGAAAACTTCCCGATTGCTTATTCCATGGTGATCCACGAGAAC 1458168
Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807
|| || | |||||| || | ||| || || | | ||| ||||||||| |||||||||||
Sbjct 1458169 ATCGAGATGTTTGAAAGGTTACTGAGATCCATCTTTGCTCCTCAGAACGTATACTGTGTC 1458228
Query 107808 CACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGC 107867
|||||||| || || || | ||||| || | || || ||||||| ||||||
Sbjct 1458229 CACGTGGACAGCAAATCTCCCAAACCTTTCCAAAAAGCCGTTCGGGCCATTGCCTCCTGC 1458288
Query 107868 TTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGA 107927
||| |||||| || |||| |||| || ||||| || ||||| ||||| ||
Sbjct 1458289 TTCGACAATGTTTTTCTGGCTTCTAAGCAGGAGAGCGTGGTGTACGCCTCTTGGTCGAGG 1458348
Query 107928 GTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCATGGAAGTAC 107987
|| |||||||| |||||||| ||| | ||| |||| || ||| |||| |||| ||||
Sbjct 1458349 GTCCAAGCTGATCTGAACTGCATGAAGGACCTGCTTCAAAGCAAGGTGCGTTGGAGGTAC 1458408
Query 107988 TTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGCC 108047
| ||||| || |||||||| || ||||| || ||||| || | ||||| |||| |||
Sbjct 1458409 CTCCTGAACACCTGCGGGACCGATTTCCCTATCAAGACGAACACAGAGATTGTCCGAGCC 1458468
Query 108048 CTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCaaaaaa 108107
|| || || |||| || || |||| |||||||||||| ||| || | ||||
Sbjct 1458469 CTAAAACTGCTGAATGGGAAAAACAACATGGAGTCTGAGAAACCGTCATCCTATAAAAGG 1458528
Query 108108 aaTCGCTGGAAATACCGCTATGAGGTGACAGACACACTGTACCCTACCAG--CAAGATG- 108164
|| ||||||||||||| | |||| ||||| || || | |||| |||||||
Sbjct 1458529 AACCGCTGGAAATACCACCATGAAGTGAC-----CAATGGCATCGTCCAGACCAAGATGA 1458583
Query 108165 --AAGGACCCTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTATTTTGTGGCCT 108222
|||| ||| || || | || | ||||||||||| || | ||||| | |||| |
Sbjct 1458584 CAAAGGGCCCCCCTCCCCAAAAGTCTCCCATGTTCACCGGCAGCGCCTACATCGTGGTCA 1458643
Query 108223 CTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGACTGGTTGAATGGG 108282
| | | |||||||| || |||| || |||| | || | || | || |||
Sbjct 1458644 CCAGGGAGTTTGTCCAGCACCTCTTTGAGGACCCCACCGCCAGGCGCTTGATCGAGTGGT 1458703
Query 108283 TCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCG--TGCTCCGTG 108340
||| || || || ||||| || || || |||||||||||| | || || ||| | | |
Sbjct 1458704 GCAAGGATACGTACAGCCCGGATGAGCATCTCTGGGCCACCTTGCATCGGATGC-CAGAG 1458762
Query 108341 GATGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACATCTCAGACATGACTGCCATCGC 108400
| |||| ||||| || ||| | | ||| | | || || |||| |||| ||||| ||
Sbjct 1458763 G-TGCCAGGCTCAGTCCCTCCCAATGACAAATTTGACCTCACAGATATGAACGCCATTGC 1458821
Query 108401 CAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCTTATGCACC 108460
|||| || |||||| ||| ||| || || |||||| ||| || ||||| | |
Sbjct 1458822 ACGGCTGGTGAAGTGGGCCTACATCGAAGGGGACATCAGCAAGGGAGCCCCTTACGGCCA 1458881
Query 108461 CTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTACTGGAT 108520
|| |||||| || | ||| |||| ||||| | || || || ||||| |||| |
Sbjct 1458882 GTGTTCTGGAGTCTACCGGCGGGCAGTCTGCGTGTATGGATTTGGAGACCTCCCCTGGCT 1458941
Query 108521 TCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGACCCGAGGGTGGATGATAACGTCCT 108580
||| | ||||||||||| || |||||||| ||||| || | || || ||||| |
Sbjct 1458942 ACTCTCACAGCATCACCTCTTTGCCAACAAGTTCGACCCCAGCATTGACGACTACGTCAT 1459001
Query 108581 GCAGTGCTTAGAAGAGTACCTACGTCATAAGGCCATCTAT 108620
||||| || |||||||| || || | ||| ||||||||
Sbjct 1459002 CCAGTGTTTGGAAGAGTATCTGCGCTACAAGACCATCTAT 1459041
>seq11981
Length=166391
Score = 116 bits (128), Expect = 3e-21
Identities = 227/333 (68%), Gaps = 2/333 (1%)
Strand=Plus/Minus
Query 107698 AAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAAAACT 107757
||||||| ||| || |||||||| || || || |||| || | || ||| | |
Sbjct 146180 AAGAAGAAACAGAATTTCCCATTGCATATTCAATAGTGGCTTATCATAAAATTAATATGC 146121
Query 107758 TTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTGGATG 107817
|||| | || ||| || || | ||||| ||||| ||| | ||||| | || || ||
Sbjct 146120 TTGAGAGACTTCTGAGAACCATATATGCTCCTCAAAACTTTTACTGCATTCATGTTGACA 146061
Query 107818 TGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAATG 107877
|||||||||||| ||||| | || || || | ||| || || || | ||||
Sbjct 146060 AAAAGTCCCCAGAGTCTTTCTTGGCAGCTGTAAAAGGGATTGCATCATGTTTTCATAATG 146001
Query 107878 TCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTG 107937
||||||| ||||| | |||| || || ||||| || ||| | | || |||||||
Sbjct 146000 TCTTCATTGCCAGCCAATTGGAAAGTGTAGTGTATGCATCATGGAGCCGGGTACAAGCTG 145941
Query 107938 ACCTGAACTGTATGGAAGACTTGCTCCA-GAGCTCAGTGCCATGGAAGTACTTACTGAAT 107996
|||| ||||| || |||| | || | ||| ||| |||||||||||| | |||
Sbjct 145940 ACCTCAACTGCAT-GAAGGATCTCTATAGGAGGAATGTGAGCTGGAAGTACTTAATCAAT 145882
Query 107997 ACATGCGGGACAGACTTCCCCATAAAGACCAAT 108029
||||| | || ||||| || |||||||||
Sbjct 145881 CTCTGCGGTATGGATTTCCCAATCAAGACCAAT 145849
Score = 84.2 bits (92), Expect = 2e-11
Identities = 195/286 (68%), Gaps = 10/286 (3%)
Strand=Plus/Minus
Query 108276 GAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGCT 108335
||||||| |||||||| || || ||||| ||| || | ||||| || ||||||| |
Sbjct 145599 GAATGGGCTAAAGACACATACAGTCCCGATGAATACTTATGGGCAACAGTTCAGCGAA-T 145541
Query 108336 CCGTG-GATGCCTGGCTCTGT-TCCTAGCCACCC-CAAGTATCACATCTCAGACATGACT 108392
|| || | | ||||| | || ||| |||| ||| ||| | | || || |||| |
Sbjct 145540 CCCTGAGGTTCCTGGTGCCGTCTCC--GCCAGTGACAAATATGATGTTTCCGATATGAAT 145483
Query 108393 GCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCT 108452
|| || ||| || | || |||||||| ||| ||||| ||||| || ||| || |||
Sbjct 145482 GCAATTGCCCGGTTTGTGAAGTGGCACTACTTTGAGGGGGATGTATCCAAGGGTGCTCCT 145423
Query 108453 TATGCACCCTGCTCTGGAATCCA--TCGGAGGGCCATCTGCATTTACGGGGCCGGGGACC 108510
|| | || ||| |||| | || || | || || ||| || | ||| |||
Sbjct 145422 TACCCCCCTTGCAATGGAGTTCACGTCCGTTCTGTATGTGTCTTT--GGAGTCGGAGACT 145365
Query 108511 TGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGA 108556
|| |||||| | | ||| ||||| |||| || |||||||||||
Sbjct 145364 TGAGCTGGATGTTACGGAAACATCATTTCTTTGCCAACAAGTTTGA 145319
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 348146205355542
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |