Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vipera_20berus_20berus_20[genbank_20GCA_5F000800605.1_202014-12-10] 28,883 sequences; 1,532,390,814 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq1 414 7e-111 seq11981 116 3e-21 >seq1 Length=2584131 Score = 414 bits (458), Expect = 7e-111 Identities = 695/1000 (70%), Gaps = 14/1000 (1%) Strand=Plus/Plus Query 107628 TACCTCAACATAACCAGAGACTGTGAGCGCTTCAAGGCCCAAAGGAAGTTCATACAGTTC 107687 ||||| ||| ||||| || ||| || ||| || | | || | ||||| |||| Sbjct 1458049 TACCTGAACGCAACCAAGGATTGTCAGAACTTTAAAGAAGAGAGAAGATTCATTGGGTTC 1458108 Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747 | |||||| |||| || | ||||||| ||||| || || |||||| |||| ||||| Sbjct 1458109 CACCTGAGTGAAGAGGAAGAAAACTTCCCGATTGCTTATTCCATGGTGATCCACGAGAAC 1458168 Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807 || || | |||||| || | ||| || || | | ||| ||||||||| ||||||||||| Sbjct 1458169 ATCGAGATGTTTGAAAGGTTACTGAGATCCATCTTTGCTCCTCAGAACGTATACTGTGTC 1458228 Query 107808 CACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGC 107867 |||||||| || || || | ||||| || | || || ||||||| |||||| Sbjct 1458229 CACGTGGACAGCAAATCTCCCAAACCTTTCCAAAAAGCCGTTCGGGCCATTGCCTCCTGC 1458288 Query 107868 TTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGA 107927 ||| |||||| || |||| |||| || ||||| || ||||| ||||| || Sbjct 1458289 TTCGACAATGTTTTTCTGGCTTCTAAGCAGGAGAGCGTGGTGTACGCCTCTTGGTCGAGG 1458348 Query 107928 GTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCATGGAAGTAC 107987 || |||||||| |||||||| ||| | ||| |||| || ||| |||| |||| |||| Sbjct 1458349 GTCCAAGCTGATCTGAACTGCATGAAGGACCTGCTTCAAAGCAAGGTGCGTTGGAGGTAC 1458408 Query 107988 TTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGCC 108047 | ||||| || |||||||| || ||||| || ||||| || | ||||| |||| ||| Sbjct 1458409 CTCCTGAACACCTGCGGGACCGATTTCCCTATCAAGACGAACACAGAGATTGTCCGAGCC 1458468 Query 108048 CTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCaaaaaa 108107 || || || |||| || || |||| |||||||||||| ||| || | |||| Sbjct 1458469 CTAAAACTGCTGAATGGGAAAAACAACATGGAGTCTGAGAAACCGTCATCCTATAAAAGG 1458528 Query 108108 aaTCGCTGGAAATACCGCTATGAGGTGACAGACACACTGTACCCTACCAG--CAAGATG- 108164 || ||||||||||||| | |||| ||||| || || | |||| ||||||| Sbjct 1458529 AACCGCTGGAAATACCACCATGAAGTGAC-----CAATGGCATCGTCCAGACCAAGATGA 1458583 Query 108165 --AAGGACCCTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTATTTTGTGGCCT 108222 |||| ||| || || | || | ||||||||||| || | ||||| | |||| | Sbjct 1458584 CAAAGGGCCCCCCTCCCCAAAAGTCTCCCATGTTCACCGGCAGCGCCTACATCGTGGTCA 1458643 Query 108223 CTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGACTGGTTGAATGGG 108282 | | | |||||||| || |||| || |||| | || | || | || ||| Sbjct 1458644 CCAGGGAGTTTGTCCAGCACCTCTTTGAGGACCCCACCGCCAGGCGCTTGATCGAGTGGT 1458703 Query 108283 TCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCG--TGCTCCGTG 108340 ||| || || || ||||| || || || |||||||||||| | || || ||| | | | Sbjct 1458704 GCAAGGATACGTACAGCCCGGATGAGCATCTCTGGGCCACCTTGCATCGGATGC-CAGAG 1458762 Query 108341 GATGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACATCTCAGACATGACTGCCATCGC 108400 | |||| ||||| || ||| | | ||| | | || || |||| |||| ||||| || Sbjct 1458763 G-TGCCAGGCTCAGTCCCTCCCAATGACAAATTTGACCTCACAGATATGAACGCCATTGC 1458821 Query 108401 CAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCTTATGCACC 108460 |||| || |||||| ||| ||| || || |||||| ||| || ||||| | | Sbjct 1458822 ACGGCTGGTGAAGTGGGCCTACATCGAAGGGGACATCAGCAAGGGAGCCCCTTACGGCCA 1458881 Query 108461 CTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTACTGGAT 108520 || |||||| || | ||| |||| ||||| | || || || ||||| |||| | Sbjct 1458882 GTGTTCTGGAGTCTACCGGCGGGCAGTCTGCGTGTATGGATTTGGAGACCTCCCCTGGCT 1458941 Query 108521 TCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGACCCGAGGGTGGATGATAACGTCCT 108580 ||| | ||||||||||| || |||||||| ||||| || | || || ||||| | Sbjct 1458942 ACTCTCACAGCATCACCTCTTTGCCAACAAGTTCGACCCCAGCATTGACGACTACGTCAT 1459001 Query 108581 GCAGTGCTTAGAAGAGTACCTACGTCATAAGGCCATCTAT 108620 ||||| || |||||||| || || | ||| |||||||| Sbjct 1459002 CCAGTGTTTGGAAGAGTATCTGCGCTACAAGACCATCTAT 1459041 >seq11981 Length=166391 Score = 116 bits (128), Expect = 3e-21 Identities = 227/333 (68%), Gaps = 2/333 (1%) Strand=Plus/Minus Query 107698 AAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAAAACT 107757 ||||||| ||| || |||||||| || || || |||| || | || ||| | | Sbjct 146180 AAGAAGAAACAGAATTTCCCATTGCATATTCAATAGTGGCTTATCATAAAATTAATATGC 146121 Query 107758 TTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTGGATG 107817 |||| | || ||| || || | ||||| ||||| ||| | ||||| | || || || Sbjct 146120 TTGAGAGACTTCTGAGAACCATATATGCTCCTCAAAACTTTTACTGCATTCATGTTGACA 146061 Query 107818 TGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAATG 107877 |||||||||||| ||||| | || || || | ||| || || || | |||| Sbjct 146060 AAAAGTCCCCAGAGTCTTTCTTGGCAGCTGTAAAAGGGATTGCATCATGTTTTCATAATG 146001 Query 107878 TCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTG 107937 ||||||| ||||| | |||| || || ||||| || ||| | | || ||||||| Sbjct 146000 TCTTCATTGCCAGCCAATTGGAAAGTGTAGTGTATGCATCATGGAGCCGGGTACAAGCTG 145941 Query 107938 ACCTGAACTGTATGGAAGACTTGCTCCA-GAGCTCAGTGCCATGGAAGTACTTACTGAAT 107996 |||| ||||| || |||| | || | ||| ||| |||||||||||| | ||| Sbjct 145940 ACCTCAACTGCAT-GAAGGATCTCTATAGGAGGAATGTGAGCTGGAAGTACTTAATCAAT 145882 Query 107997 ACATGCGGGACAGACTTCCCCATAAAGACCAAT 108029 ||||| | || ||||| || ||||||||| Sbjct 145881 CTCTGCGGTATGGATTTCCCAATCAAGACCAAT 145849 Score = 84.2 bits (92), Expect = 2e-11 Identities = 195/286 (68%), Gaps = 10/286 (3%) Strand=Plus/Minus Query 108276 GAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGCT 108335 ||||||| |||||||| || || ||||| ||| || | ||||| || ||||||| | Sbjct 145599 GAATGGGCTAAAGACACATACAGTCCCGATGAATACTTATGGGCAACAGTTCAGCGAA-T 145541 Query 108336 CCGTG-GATGCCTGGCTCTGT-TCCTAGCCACCC-CAAGTATCACATCTCAGACATGACT 108392 || || | | ||||| | || ||| |||| ||| ||| | | || || |||| | Sbjct 145540 CCCTGAGGTTCCTGGTGCCGTCTCC--GCCAGTGACAAATATGATGTTTCCGATATGAAT 145483 Query 108393 GCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCT 108452 || || ||| || | || |||||||| ||| ||||| ||||| || ||| || ||| Sbjct 145482 GCAATTGCCCGGTTTGTGAAGTGGCACTACTTTGAGGGGGATGTATCCAAGGGTGCTCCT 145423 Query 108453 TATGCACCCTGCTCTGGAATCCA--TCGGAGGGCCATCTGCATTTACGGGGCCGGGGACC 108510 || | || ||| |||| | || || | || || ||| || | ||| ||| Sbjct 145422 TACCCCCCTTGCAATGGAGTTCACGTCCGTTCTGTATGTGTCTTT--GGAGTCGGAGACT 145365 Query 108511 TGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGA 108556 || |||||| | | ||| ||||| |||| || ||||||||||| Sbjct 145364 TGAGCTGGATGTTACGGAAACATCATTTCTTTGCCAACAAGTTTGA 145319 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348146205355542