Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vipera_20berus_20berus_20[genbank_20GCA_5F000800605.1_202014-12-10] 28,883 sequences; 1,532,390,814 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq10558 129 6e-25 seq5028 93.3 4e-14 >seq10558 Length=413728 Score = 129 bits (142), Expect = 6e-25 Identities = 110/136 (81%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 14226 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 14285 |||||||||||||||| || || || ||||| || | ||| ||||| | |||||||| | Sbjct 114603 CCTCATCTCTACTAATCAGCTCATTAGAAAAAGTAAGTCCGGGCATTAGACCTCGTTTCT 114544 Query 14286 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14345 ||| ||||||||||| || || || || |||||||| ||||| |||||||||||||| | Sbjct 114543 TTAGCCAAAATATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCAACTGCAGCAAATG 114484 Query 14346 CTATTAATCGTTCTCC 14361 ||| || ||||| || Sbjct 114483 CTACTATACGTTCACC 114468 Score = 96.9 bits (106), Expect = 3e-15 Identities = 92/116 (79%), Gaps = 4/116 (3%) Strand=Plus/Minus Query 14459 TCTTTAGTA--CTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGT 14516 ||||||| | ||| |||||| |||||||||||||| ||||||||||| || || |||| Sbjct 112726 TCTTTAGAATCCTT--AATGTAAGTATCAATAAGTAAACTATACATTTCTGAATGAATGT 112669 Query 14517 TTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCT 14572 | ||||| || ||||| || ||||| ||||| | ||||||| |||||| ||| Sbjct 112668 TCTCCATGGCAATCTGGAAGCCATAGAAACAGCGTGCTTCTGTGACTTGTACTTCT 112613 Score = 95.1 bits (104), Expect = 1e-14 Identities = 78/95 (82%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 13898 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13957 || || || ||||| |||||||||| | || | |||||||||||||| ||||| ||| Sbjct 116742 GACATCACACCCATCCTTTGATATTCTCCTACACGCTTTTCAAAGAAGTTGGTTTTGCCT 116683 Query 13958 TCCAGTGATATATTTTCCATAAAATCAAATGGATT 13992 ||||| || ||||| |||||||| ||||||||||| Sbjct 116682 TCCAGAGAGATATTCTCCATAAAGTCAAATGGATT 116648 >seq5028 Length=21598 Score = 93.3 bits (102), Expect = 4e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 14228 TCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttttt 14287 |||||||| ||||||||||| || || || || | |||||||| || |||| || || Sbjct 4568 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTAAGGCCTGGCATTAACCCTCTCTTCTTG 4509 Query 14288 AACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGC 14346 | ||||||||| || || || | || || ||||| ||||| || || ||||||||||| Sbjct 4508 AGCCAAAATATGGCTGCAAAAGCACCAGAGAAGAAGATTCCTTCGACAGCAGCAAACGC 4450 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482171455150440