Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vipera_20berus_20berus_20[genbank_20GCA_5F000800605.1_202014-12-10] 28,883 sequences; 1,532,390,814 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq25428 129 5e-25 seq25442 82.4 7e-11 >seq25428 Length=70394 Score = 129 bits (142), Expect = 5e-25 Identities = 124/159 (78%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 23046 CCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCG 23105 ||||||| || | | |||||||| ||||| ||||| || || ||||| ||||| || | Sbjct 13208 CCACCTCCTCCTGGCTGGTGTACTCCACAATCTCGGTGCAGAGGTTGCTGCACTTGATGG 13267 Query 23106 TGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCG 23165 |||||| || ||||||||| || || ||||| | ||||||||||||||||| |||| Sbjct 13268 TGCCCAGGTTCTGCTGGTTGCTCTTGCGGTTGCAGGCGTCCTTGTAGAGCATGTAGGGCG 13327 Query 23166 TGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACA 23204 | |||||||| ||| ||||||||||| || ||||| Sbjct 13328 TCCCCGTCTCCGTCTGAGACTCGATGATGGCGTACCACA 13366 Score = 102 bits (112), Expect = 7e-17 Identities = 115/154 (75%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 23342 TCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGC 23401 || || ||| |||| || || ||||| ||||| || |||||||| || || ||||| | | Sbjct 15442 TCCACCCGTTTCATGAAGAGGTCCGGGATCCAGAGCGCGTAGAAGAGGTCCCGGGCCCTC 15501 Query 23402 ACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCAC 23461 |||||| || ||||||||||| |||| || | ||| || || | ||| ||||| Sbjct 15502 TGCTCCTCCTTCCCGGTGTTCTTCTTCAGGTCGAGAAACTCAAAGATGTCGAAGTGCCAG 15561 Query 23462 GGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCT 23495 ||||| ||||| | ||| || || || ||||||| Sbjct 15562 GGCTCCAGGTAGATGGCGAAGGCCCCGGGTCTCT 15595 Score = 82.4 bits (90), Expect = 7e-11 Identities = 105/145 (72%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 22459 CACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAA 22518 ||| || ||||| || |||| || ||||| ||| |||||| ||| | || || | Sbjct 6701 CACCTGGAACTCCCCCGACAGCACCCGGCGGGTGTAGATGTTGCTGGTGTAGGGCTCCAC 6760 Query 22519 AGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAG 22578 ||||||||||| ||||| |||||||| || || || || ||||| || |||| ||| || Sbjct 6761 CGATTCATTGTTCCCCAGGATCTGAGCCGTGGAGGCCGTGGGCATGGGGGCCACCAGGAG 6820 Query 22579 CGAGTTTCTCAAGCCGTGCTTTGAA 22603 ||| || | |||||| | ||| Sbjct 6821 GCTGTTCCTGACCCCGTGCCTGGAA 6845 >seq25442 Length=71287 Score = 82.4 bits (90), Expect = 7e-11 Identities = 113/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| || || || ||||| |||| || ||||| |||||| | || || || || Sbjct 26741 AAAATGCAGATCTTTGTGAAGACCTTGACTGGGAAAACCATCACCCTAGAGGTGGAGCCC 26800 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 ||||| | || | ||||| | || ||| ||||||||| | || || ||| Sbjct 26801 AGCGACACCATTGAGAACGTCAAGGCCAAGATCCAGGATAAGGAAGGCATTCCTCCTGAC 26860 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 |||||| | || || || |||||||||||| ||||||| Sbjct 26861 CAGCAGAGGCTGATCTTTGCTGGCAAACAGCTGGAAGA 26898 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445605461613360