Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vipera_20berus_20berus_20[genbank_20GCA_5F000800605.1_202014-12-10] 28,883 sequences; 1,532,390,814 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq14126 127 3e-24 seq10558 123 3e-23 seq5028 98.7 1e-15 seq25428 93.3 6e-14 >seq14126 Length=159079 Score = 127 bits (140), Expect = 3e-24 Identities = 145/195 (74%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 9227 TTATTTCTTATTAGATACTTCCAAAAGCTGTAACAGATGCAAGAACAGATTGATGATATC 9286 |||||| |||||| || |||| | | || | ||| ||||| |||||||||||||| || Sbjct 139818 TTATTTTTTATTAAATGCTTCTAGCAAATGAAGCAGGTGCAAAAACAGATTGATGATGTC 139877 Query 9287 CAAGTAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGA 9346 ||| || | |||||| | |||| | ||| ||||| || ||||| || || |||| | Sbjct 139878 CAAATAAAGATTGATTGCAGCTAGTATATATTCTTCCGGAGAGAGTTTGTGCATTAATAG 139937 Query 9347 GTGCGTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACAGGACCAG 9406 || ||||| ||||| || ||||| ||||| | ||| || || ||||| | ||||| Sbjct 139938 ATGAGTGTCGTAGATGATAAATCCACAGAACAGAAGTGCTCCTGCAGCAGCAAATACCAG 139997 Query 9407 CTCCACTGTTTCACT 9421 ||| ||| ||||||| Sbjct 139998 CTCTACTATTTCACT 140012 >seq10558 Length=413728 Score = 123 bits (136), Expect = 3e-23 Identities = 100/121 (83%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| ||||||||||| | || || ||||| || |||||||||||||| || || || | Sbjct 114603 CCTCATCTCTACTAATCAGCTCATTAGAAAAAGTAAGTCCGGGCATTAGACCTCGTTTCT 114544 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | ||||||||||| || ||||| || ||||||||||| |||||||| ||||| ||||| | Sbjct 114543 TTAGCCAAAATATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCAACTGCAGCAAATG 114484 Query 36300 C 36300 | Sbjct 114483 C 114483 Score = 98.7 bits (108), Expect = 1e-15 Identities = 72/84 (86%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 36655 CACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATG 36714 ||| |||||| ||||||| ||||| |||||||| || || ||||| | |||||||||||| Sbjct 105911 CACCTCTTCCGCTGTCCAGAATGACGCCTCTGCTTTCTTGTACATTTGCCAGATGTCATG 105852 Query 36715 ATATTGAATTGGAAAAATAACAAA 36738 |||||||| |||||||| ||||| Sbjct 105851 GTATTGAATAGGAAAAATGACAAA 105828 Score = 86.0 bits (94), Expect = 8e-12 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 36409 TTCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTT 36468 ||| ||| ||| |||| || |||||||| | | |||||||||||| ||||||||||| Sbjct 112727 TTCTTTAGAATCCTTAATGTAAGTATCAATAAGTAAACTATACATTTCTGAATGAATGTT 112668 Query 36469 TTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT 36523 || ||||| || || || || |||||||| | || || || | ||||||||| Sbjct 112667 CTCCATGGCAATCTGGAAGCCATAGAAACAGCGTGCTTCTGTGACTTGTACTTCT 112613 >seq5028 Length=21598 Score = 98.7 bits (108), Expect = 1e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 36182 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 36241 || ||||| ||||| | ||| ||||| || || || || ||||||| || | ||| || Sbjct 4568 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTAAGGCCTGGCATTAACCCTCTCTTCTTG 4509 Query 36242 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCA 36301 ||||||||||||| ||||| | ||||| ||||| |||||||| || || ||||| ||| Sbjct 4508 AGCCAAAATATGGCTGCAAAAGCACCAGAGAAGAAGATTCCTTCGACAGCAGCAAACGCA 4449 Query 36302 ATAAGTCTCTCTCC 36315 | | ||| || || Sbjct 4448 ACCACTCTTTCACC 4435 >seq25428 Length=70394 Score = 93.3 bits (102), Expect = 6e-14 Identities = 125/174 (72%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 66799 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAA 66858 ||||||| | || || ||||||||||| ||||| || || || || | ||||| | | Sbjct 25356 CACTAAAGACCTTCTTCGTTTCTTTGTGCAGATTGGAGACAGCGATCCGTGCGGCCAGGA 25415 Query 66859 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 66918 |||| || || || | | || || ||||||||| | || || ||||| ||||||| Sbjct 25416 TGGCGTAGTCAGGGTACTTGGTGGTGAGAGTGGCTGCCGTCTCAGCCGCCAGCGTGTCCA 25475 Query 66919 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCATAGCTATTT 66972 ||| ||||| || || ||| | || | || ||||| |||||||| | |||| Sbjct 25476 GTTCGACCGTGGTCACCCCACTGTAGAGGCCCTGGATCACCTTCATGGTGATTT 25529 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657935174937720