Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vipera_20berus_20berus_20[genbank_20GCA_5F000800605.1_202014-12-10] 28,883 sequences; 1,532,390,814 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq10558 129 6e-25 seq5028 93.3 4e-14 >seq10558 Length=413728 Score = 129 bits (142), Expect = 6e-25 Identities = 110/136 (81%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 13682 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13741 |||||||||||||||| || || || ||||| || | ||| ||||| | |||||||| | Sbjct 114603 CCTCATCTCTACTAATCAGCTCATTAGAAAAAGTAAGTCCGGGCATTAGACCTCGTTTCT 114544 Query 13742 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 13801 ||| ||||||||||| || || || || |||||||| ||||| |||||||||||||| | Sbjct 114543 TTAGCCAAAATATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCAACTGCAGCAAATG 114484 Query 13802 CTATTAGTCGTTCTCC 13817 ||| || ||||| || Sbjct 114483 CTACTATACGTTCACC 114468 Score = 89.7 bits (98), Expect = 5e-13 Identities = 90/115 (78%), Gaps = 4/115 (3%) Strand=Plus/Minus Query 13915 TCTTTAGTA--CTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGT 13972 ||||||| | ||| |||||| |||||||||||||| ||||||||||| || || |||| Sbjct 112726 TCTTTAGAATCCTT--AATGTAAGTATCAATAAGTAAACTATACATTTCTGAATGAATGT 112669 Query 13973 TTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTC 14027 | || || || ||||| || ||||| ||||| | ||||||| |||||| || Sbjct 112668 TCTCCATGGCAATCTGGAAGCCATAGAAACAGCGTGCTTCTGTGACTTGTACTTC 112614 Score = 82.4 bits (90), Expect = 7e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 14045 CCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAA 14104 ||||||||||||| |||||||||||||| |||||||| |||||||| |||| ||| | Sbjct 106496 CCAAGTTTTCATTGACAATACCATCACTTGCTGCAAAGAATGCCAAGATGTGGGAAATGA 106437 Query 14105 AGTATTGCTCTTC 14117 |||| | |||||| Sbjct 106436 AGTACTTCTCTTC 106424 >seq5028 Length=21598 Score = 93.3 bits (102), Expect = 4e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 13684 TCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttttt 13743 |||||||| ||||||||||| || || || || | |||||||| || |||| || || Sbjct 4568 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTAAGGCCTGGCATTAACCCTCTCTTCTTG 4509 Query 13744 AACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGC 13802 | ||||||||| || || || | || || ||||| ||||| || || ||||||||||| Sbjct 4508 AGCCAAAATATGGCTGCAAAAGCACCAGAGAAGAAGATTCCTTCGACAGCAGCAAACGC 4450 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478416011496120