Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vipera_20berus_20berus_20[genbank_20GCA_5F000800605.1_202014-12-10] 28,883 sequences; 1,532,390,814 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq10558 116 3e-21 seq27526 105 6e-18 >seq10558 Length=413728 Score = 116 bits (128), Expect = 3e-21 Identities = 111/142 (78%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 13167 GCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTC 13226 || || | ||||||||||| || ||||| || ||||| || || || ||||| || |||| Sbjct 114609 GCCATACCTCATCTCTACTAATCAGCTCATTAGAAAAAGTAAGTCCGGGCATTAGACCTC 114550 Query 13227 GTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTG 13286 |||| || | ||||||||| | ||||| || || ||||| || |||||||||||||| | Sbjct 114549 GTTTCTTTAGCCAAAATATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCAACTGCAG 114490 Query 13287 CAAACGCTATCAACCTTTCACC 13308 |||| |||| | | |||||| Sbjct 114489 CAAATGCTACTATACGTTCACC 114468 Score = 91.5 bits (100), Expect = 1e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 12956 TTTTTACACCCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATT 13015 || ||| | |||| ||| || | || |||||| || ||||| || || ||||| |||||| Sbjct 115228 TTGTTAAAACCTAGTTCCAGGATCAGTCTGTCTGCTACAAATTCAATATACTGCTTCATT 115169 Query 13016 AAATCACAGTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAA 13065 ||| ||||||||||| || | |||||||||| |||||||| ||||| Sbjct 115168 AAAATGCAGTTCATTCCGATCAGGTTTACAGGCAATGCTTCTGTCAAAAA 115119 Score = 89.7 bits (98), Expect = 4e-13 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 13420 AATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTG 13479 ||| |||||||| || | ||| |||||||||||||||||||| || ||||| || || || Sbjct 112712 AATGTAAGTATCAATAAGTAAACTATACATTTCTGAATGAATGTTCTCCATGGCAATCTG 112653 Query 13480 GAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTC 13518 ||| ||||| ||||| | || |||| || || ||||| Sbjct 112652 GAAGCCATAGAAACAGCGTGCTTCTGTGACTTGTACTTC 112614 >seq27526 Length=59824 Score = 105 bits (116), Expect = 6e-18 Identities = 132/180 (73%), Gaps = 1/180 (1%) Strand=Plus/Minus Query 5448 GAAAAACATTCCACTGTAAAACCCCACATAATAAAATCCAGACACTATTTTACACGTAAA 5507 |||||| |||||||||| || | | | |||| | |||||| | ||||| ||| | Sbjct 21930 GAAAAAGCTTCCACTGTAGAAACTTAAAAAATAGATTCCAGAAATAATTTTGCACATTGC 21871 Query 5508 ATTTCCAAATATCCACTGATCTAACTGATAATGTATTTGAAATGGAAATGACATAACAAA 5567 || |||||||| ||||| ||||| | |||||| || ||| ||| | ||| | || || Sbjct 21870 ATCTCCAAATACCCACTCATCTACCACATAATGAATCCGAAGTGGGATTGAGAAAATGAA 21811 Query 5568 TAACAGATCGGATATGGCTAAATTTATTAAAAATATATCAGTTACAGTCTTTAACTTTCT 5627 | || ||| || ||||||||||||| || |||||||||| | | |||| || ||||| Sbjct 21810 AAGCAAATCAGAGATGGCTAAATTTAATAGGTATATATCAGTCATACTCTTGAA-TTTCT 21752 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430830689211966