Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vipera_20berus_20berus_20[genbank_20GCA_5F000800605.1_202014-12-10] 28,883 sequences; 1,532,390,814 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq25442 163 7e-35 seq5893 158 3e-33 seq27101 118 2e-21 seq5028 87.8 4e-12 >seq25442 Length=71287 Score = 163 bits (180), Expect = 7e-35 Identities = 156/200 (78%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || |||||||| ||||| | || ||||| || ||||| ||| Sbjct 26940 GTGGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCTTCCAGCTGTTTGCCA 26881 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || |||||||| || |||||||| || ||||| |||||||| ||||| || || Sbjct 26880 GCAAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCCTTATCCTGGATCTTGGCCTTG 26821 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | ||| ||||| || || |||||||| || || || || ||||| | || Sbjct 26820 ACGTTCTCAATGGTGTCGCTGGGCTCCACCTCTAGGGTGATGGTTTTCCCAGTCAAGGTC 26761 Query 104543 TTTACAAATATCTGCATTTT 104562 || ||||| ||||||||||| Sbjct 26760 TTCACAAAGATCTGCATTTT 26741 >seq5893 Length=194688 Score = 158 bits (174), Expect = 3e-33 Identities = 134/165 (81%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 78486 GAGCATTATGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCA 78545 |||| ||||||||||| || || || ||||| || || || || || || || ||||||| Sbjct 56699 GAGCTTTATGGTGGTACTACATATCCAAAGGGATTGAGTATCTGGACACAATATTCTTCA 56758 Query 78546 TCCTACGAAAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGT 78605 ||||| |||||||||| |||||||| || ||||| || || ||||| ||||| ||||||| Sbjct 56759 TCCTAAGAAAGAAATTCAATCAAATCAGCTTTCTTCACGTCTATCACCATTTCACTATGT 56818 Query 78606 TTACTTTGGGATGGATAGGTATTAAATGGTTCGCAGGAGGACAAG 78650 ||||||| | ||||| || || || ||| | ||||||||||||| Sbjct 56819 TTACTTTATGGTGGATTGGCATAAAGTGGGTTGCAGGAGGACAAG 56863 >seq27101 Length=56424 Score = 118 bits (130), Expect = 2e-21 Identities = 121/158 (77%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 104405 TCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTA 104464 ||||| || || || || ||||| || |||||||| || || || || || ||||| ||| Sbjct 14642 TCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTA 14583 Query 104465 TCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATA 104524 || || ||||| || || ||||| || | ||| ||||| || || ||||| || || || Sbjct 14582 TCTTGGATCTTAGCCTTGACATTCTCAATGGTGTCGCTGGGCTCCACCTCCAGAGTGATG 14523 Query 104525 GTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 ||||| ||||| | || || ||||| ||||||||||| Sbjct 14522 GTCTTCCCAGTCAAGGTCTTCACAAAGATCTGCATTTT 14485 >seq5028 Length=21598 Score = 87.8 bits (96), Expect = 4e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 268916 CAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAAT 268975 ||||| || ||| | || ||||| | ||||| || || || |||||| | ||||||||| Sbjct 2443 CAAGAAGTGCAGGTCCCAGAAGCTCGCTGTTTCTATGGCTTTCAGATATCAATAGAAAAT 2502 Query 268976 ATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATAT 269016 ||||||| |||||||||||| | |||||||| || || || Sbjct 2503 GTTCATTCTGAGATGTACAGTTTGTTAATAGACACCTACAT 2543 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1150972309550164