Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vipera_20berus_20berus_20[genbank_20GCA_5F000800605.1_202014-12-10]
28,883 sequences; 1,532,390,814 total letters
Query= NC_005906.1
Length=81755
Score E
Sequences producing significant alignments: (Bits) Value
seq26342 93.3 2e-14
seq11057 86.0 3e-12
seq26962 84.2 1e-11
seq26819 84.2 1e-11
seq24556 82.4 4e-11
>seq26342
Length=61934
Score = 93.3 bits (102), Expect = 2e-14
Identities = 71/85 (84%), Gaps = 0/85 (0%)
Strand=Plus/Plus
Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504
|||||| | |||||||| | |||||||||| ||||||| ||||||||||||| |||
Sbjct 16460 AAAAATTATATTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACG 16519
Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529
|||| |||||||||||||| ||||
Sbjct 16520 CTCTAACCAACTGAGCTAACCGGCC 16544
>seq11057
Length=8614
Score = 86.0 bits (94), Expect = 3e-12
Identities = 75/92 (82%), Gaps = 3/92 (3%)
Strand=Plus/Minus
Query 11440 TAATAAAAAATCAAA--TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAG 11497
|||||||||| || ||||||| | |||||||||| ||||||| ||||||||||
Sbjct 102 TAATAAAAAA-CATTGGTTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAG 44
Query 11498 CACGACGCTCTRACCAACTGAGCTAATGGGCC 11529
||| ||||||| |||||||||||||| ||||
Sbjct 43 CACCACGCTCTAACCAACTGAGCTAACCGGCC 12
>seq26962
Length=56898
Score = 84.2 bits (92), Expect = 1e-11
Identities = 65/78 (83%), Gaps = 0/78 (0%)
Strand=Plus/Plus
Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514
||||||| | |||||||||| ||||||| ||||||||||||| ||||||| |||||
Sbjct 20670 TTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAA 20729
Query 11515 CTGAGCTAATGGGCCGTC 11532
||||||||| |||| ||
Sbjct 20730 CTGAGCTAACCGGCCCTC 20747
>seq26819
Length=256395
Score = 84.2 bits (92), Expect = 1e-11
Identities = 57/65 (88%), Gaps = 0/65 (0%)
Strand=Plus/Minus
Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527
|||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| ||
Sbjct 120626 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 120567
Query 11528 CCGTC 11532
|| ||
Sbjct 120566 CCATC 120562
>seq24556
Length=84784
Score = 82.4 bits (90), Expect = 4e-11
Identities = 55/62 (89%), Gaps = 0/62 (0%)
Strand=Plus/Plus
Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527
|||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| ||
Sbjct 29191 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 29250
Query 11528 CC 11529
||
Sbjct 29251 CC 29252
Lambda K H
0.639 0.410 0.921
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 261399152074108
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |