Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vipera_20berus_20berus_20[genbank_20GCA_5F000800605.1_202014-12-10] 28,883 sequences; 1,532,390,814 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq26342 93.3 2e-14 seq11057 86.0 3e-12 seq26962 84.2 1e-11 seq26819 84.2 1e-11 seq24556 82.4 4e-11 >seq26342 Length=61934 Score = 93.3 bits (102), Expect = 2e-14 Identities = 71/85 (84%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 |||||| | |||||||| | |||||||||| ||||||| ||||||||||||| ||| Sbjct 16460 AAAAATTATATTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACG 16519 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| |||||||||||||| |||| Sbjct 16520 CTCTAACCAACTGAGCTAACCGGCC 16544 >seq11057 Length=8614 Score = 86.0 bits (94), Expect = 3e-12 Identities = 75/92 (82%), Gaps = 3/92 (3%) Strand=Plus/Minus Query 11440 TAATAAAAAATCAAA--TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAG 11497 |||||||||| || ||||||| | |||||||||| ||||||| |||||||||| Sbjct 102 TAATAAAAAA-CATTGGTTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAG 44 Query 11498 CACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||| ||||||| |||||||||||||| |||| Sbjct 43 CACCACGCTCTAACCAACTGAGCTAACCGGCC 12 >seq26962 Length=56898 Score = 84.2 bits (92), Expect = 1e-11 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||||| | |||||||||| ||||||| ||||||||||||| ||||||| ||||| Sbjct 20670 TTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAA 20729 Query 11515 CTGAGCTAATGGGCCGTC 11532 ||||||||| |||| || Sbjct 20730 CTGAGCTAACCGGCCCTC 20747 >seq26819 Length=256395 Score = 84.2 bits (92), Expect = 1e-11 Identities = 57/65 (88%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 120626 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 120567 Query 11528 CCGTC 11532 || || Sbjct 120566 CCATC 120562 >seq24556 Length=84784 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 29191 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 29250 Query 11528 CC 11529 || Sbjct 29251 CC 29252 Lambda K H 0.639 0.410 0.921 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261399152074108