Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vipera_20berus_20berus_20[genbank_20GCA_5F000800605.1_202014-12-10] 28,883 sequences; 1,532,390,814 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq21173 138 2e-27 seq28653 131 2e-25 >seq21173 Length=136489 Score = 138 bits (152), Expect = 2e-27 Identities = 138/179 (77%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 8765 CCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTCGCCATGAGGCCT 8824 ||||| || |||||||| |||||||| | |||||||||||| |||| ||| ||| || Sbjct 112558 CCGCCAAAAGTGCTGGGCTTCCAGTATTCGGGGGAGCAGATGGGGTTCCCCAGGAGCCCC 112617 Query 8825 TTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGG 8884 || | ||| || |||||||||| ||| | |||||||| || |||||| |||||| | Sbjct 112618 TTCAAGGAGAAGGGAGCCCCCATCTCTATCATGCTCTCTCCAAAGATGCTGTTGGGGTAG 112677 Query 8885 GGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCTCCGTAAAGGGC 8943 | ||| |||||||| | |||| | | ||||||| ||| || |||||||| || || || Sbjct 112678 GTCTTCTCCACCAACAGGCCGGGGAAGAACTCCAGAGCATCAATGTCTCCATACAGCGC 112736 >seq28653 Length=47310 Score = 131 bits (144), Expect = 2e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 9634 GTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGAACATCGCACACT 9693 |||||||| ||| |||| ||| ||||||||| ||||||| || ||||| | || || Sbjct 2130 GTCTGAAATAGTCGTTCATCATCCCATTCTGGGTGTTCTCCCTTAAGAACGGCACAGACC 2071 Query 9694 CTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGCACCAGGCCAAAA 9753 | || ||||||| |||||| | || || |||||||| || || || |||| |||||| Sbjct 2070 CGATTATGTTCCCGGAGCCACAATGTGGCATACATCATCAGCCCTGGAACCAAGCCAAAG 2011 Query 9754 GCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9813 |||| || || |||| | || | || || || | ||| ||||||||||| | | Sbjct 2010 ACCTCCTGTCCTACAGAAAATTTCAGGTGATCAGGGACGTGGGGTGGATAGATCATTTCC 1951 Query 9814 ACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATCTG 9863 |||| ||||| || | || ||||||||||| || ||||| ||||| Sbjct 1950 GCCTGAGTTTCTTTCACAGTAGGTGGATACATTTCTCCATCAATCATCTG 1901 Score = 131 bits (144), Expect = 2e-25 Identities = 175/238 (74%), Gaps = 4/238 (2%) Strand=Plus/Minus Query 8741 TTGACGATCCCAAACCCCACGTCT-CCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGA 8799 || ||||| |||| ||||| ||| || || || || || || |||||||| | || || Sbjct 5308 TTCACGATGTCAAAGCCCAC-TCTACCTCCAAAAGTACTTGGCTTCCAGTATTCAGGTGA 5250 Query 8800 GCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCT 8859 ||||||||| || |||| || ||||| | ||| || |||||||| || || | ||| | Sbjct 5249 GCAGATGACATTTCCCATAAGACCTTTCAAGGAGAAGGGAGCCCCAAGTTCAATCATGGT 5190 Query 8860 CTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAA-TCCGGTGTACAACTCCA 8918 |||||| |||||||| ||||| ||||||| || |||||| | | ||| || |||| Sbjct 5189 CTCACCAAAGATGGCTCCAGGACGTGGCTTTT-CAACAAGAAGAGCAGGGTATAATTCCA 5131 Query 8919 CAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTGT 8976 ||| || || ||||| || || | ||||| ||||| ||||| || || ||||| Sbjct 5130 TAGCATCAATATCTCCATAGAGCTCTTCAAGTTCTGCAGCCATTTCTTTCTCACCTGT 5073 Score = 84.2 bits (92), Expect = 3e-11 Identities = 110/151 (73%), Gaps = 1/151 (1%) Strand=Plus/Minus Query 10029 CTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAAA 10088 ||||||||||| |||| ||||| ||||| | || ||| | ||| ||| | || Sbjct 967 CTTACCCCATGCCCCAAACCTTTTGTGAAACCTGGTCCTTTCTGAGTATCTGTCTTGAAG 908 Query 10089 AACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATCG 10148 ||||||| |||||||| ||| |||| |||| ||||| | || ||||| || ||||| Sbjct 907 TACTGGTGAGTGAAATGCTGGGCAAAGAAGGTGAACATGACATTTGTGCCTTGAGGATCA 848 Query 10149 GGAGTGAAGGTCCTCCGAAG-AAGAGTTTTT 10178 ||| |||| | |||| || |||| ||||| Sbjct 847 GGAATGAATTTTCTCCTTAGCAAGAATTTTT 817 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708268995977520