Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vipera_20berus_20berus_20[genbank_20GCA_5F000800605.1_202014-12-10] 28,883 sequences; 1,532,390,814 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq25442 104 2e-17 seq27101 86.0 6e-12 >seq25442 Length=71287 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870 || || ||||| || | ||| || || | |||| | ||| ||||||||||| || Sbjct 26940 GTGGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCTTCCAGCTGTTTGCCA 26881 Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930 ||||||| | || ||||| || |||||||| ||||| || || | || || |||||| Sbjct 26880 GCAAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCCTTATCCTGGATCTTGGCCTTG 26821 Query 94931 ACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTT 94990 ||| | | ||||| | | || || || | ||||||||||| ||||| | || Sbjct 26820 ACGTTCTCAATGGTGTCGCTGGGCTCCACCTCTAGGGTGATGGTTTTCCCAGTCAAGGTC 26761 Query 94991 TTCACAAAGATCTGCAT 95007 ||||||||||||||||| Sbjct 26760 TTCACAAAGATCTGCAT 26744 >seq27101 Length=56424 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || |||||||| || ||| ||||||| | || ||||| || || ||||| ||||| || Sbjct 14642 TCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTA 14583 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || |||||||| | | ||||| | | || || || | |||||| Sbjct 14582 TCTTGGATCTTAGCCTTGACATTCTCAATGGTGTCGCTGGGCTCCACCTCCAGAGTGATG 14523 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || ||||| | || ||||||||||||||||| Sbjct 14522 GTCTTCCCAGTCAAGGTCTTCACAAAGATCTGCAT 14488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448129350065880