Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vipera_20berus_20berus_20[genbank_20GCA_5F000800605.1_202014-12-10] 28,883 sequences; 1,532,390,814 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq25174 199 6e-47 seq26885 178 2e-40 seq24556 165 1e-36 seq19558 143 4e-30 seq24053 105 1e-18 >seq25174 Length=275035 Score = 199 bits (220), Expect = 6e-47 Identities = 211/274 (77%), Gaps = 3/274 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| ||||||| | |||| ||||||||||||||||| ||||| || || |||| Sbjct 188229 CGCAAAGCGCCATCGCAAAG-TCTTGCGAGATAACATCCAAGGCATCACTAAACCCGCTA 188287 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| ||| ||||||||||||| ||||| |||||| ||||||| ||| |||| || |||| Sbjct 188288 TCCGCCGTTTGGCTCGTCGTGGCGGAGTGAAGCGTATCTCTGGCTTGATCTACGAGGAGA 188347 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 ||| | || | ||| |||||||| | | ||| |||| ||||| | || |||| Sbjct 188348 CTCGCGGGGTGCTAAAGGTCTTCCTCGAAAACGTCATCCGCGATGCCGTGACTTACACCG 188407 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || | ||||| || || |||||||| | || ||||| ||||| || |||| Sbjct 188408 AGCACGCCAAGAGAAAGACCGTGACTGCCATGGATGTGGTGTATGCTTTGAAGCGCCAAG 188467 Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTT-AATCTT 16703 |||||| | || || ||||| ||| |||||| Sbjct 188468 GCCGTACTCTCTACGGATTTGGGGGTTAAATCTT 188501 Score = 181 bits (200), Expect = 2e-41 Identities = 203/269 (75%), Gaps = 2/269 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| || |||| | |||| ||||| ||||||||||| ||||| ||||| |||| Sbjct 172132 CGCAAAGCGCCACCGCAAAG-TCTTGCGAGACAACATCCAAGGCATCACTAAGCCCGCTA 172074 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| ||| ||||||||||||| ||||| |||||| |||| || ||| |||| || |||| Sbjct 172073 TCCGCCGTTTGGCTCGTCGTGGCGGAGTGAAGCGTATCTCGGGCTTGATCTACGAGGAGA 172014 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 ||| | || | ||| ||||||| | | ||| |||| ||||| | || |||| Sbjct 172013 CTCGCGGGGTGCTAAAGGTCTTCCTTGAAAACGTCATCCGCGATGCCGTGACTTACACCG 171954 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || | ||||| || || |||||||| | || || || ||||| || |||| Sbjct 171953 AGCACGCCAAGAGAAAGACCGTGACTGCCATGGATGTGGTGTACGCTTTGAAGCGCCAAG 171894 Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||||| | || || ||||| ||||| Sbjct 171893 GCCGTACTCTCTACGGATTTGGGGGTTAA 171865 >seq26885 Length=553804 Score = 178 bits (196), Expect = 2e-40 Identities = 185/243 (76%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||| | ||||| | | || || |||||||||||||| || |||||||| ||||| Sbjct 490905 CGCGAAGAGACATCGGAAAGTGCTCCGCGATAACATCCAAGGCATTACCAAGCCTGCTAT 490846 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||| ||||||| ||||| ||||| |||||| | ||||| ||| | |||||||| | Sbjct 490845 TCGTCGTTTGGCTCGCCGTGGGGGAGTAAAGCGTATTTCTGGCTTGATTTATGAAGAAAC 490786 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | || ||||| | ||||| | | |||||| | |||||| | ||| ||||| Sbjct 490785 TCGGGGCGTACTGAAGGTTTTCCTGGAAAACGTTATTCGTGATGCCGTGACCTACACCGA 490726 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||| || ||||| ||||| || || | |||||| |||| ||||| ||||||| ||||| Sbjct 490725 GCATGCGAAACGAAAGACCGTGACTGCGATGGATGTCGTTTATGCCCTGAAACGCCAAGG 490666 Query 16672 CCG 16674 || Sbjct 490665 TCG 490663 Score = 168 bits (186), Expect = 1e-37 Identities = 194/261 (74%), Gaps = 0/261 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||| | ||||| | | || || |||||||||||||| ||||| ||||| ||||| Sbjct 494646 CGCCAAGAGGCATCGGAAAGTGCTCCGCGATAACATCCAAGGCATCACTAAGCCTGCTAT 494587 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || ||||||||||| ||||| || || || ||| | || || ||| | || ||||||| Sbjct 494586 ACGCCGTCTGGCTCGCCGTGGAGGTGTGAAACGTATTTCGGGCTTGATTTACGAAGAGAC 494527 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | ||| ||||| |||| | ||| |||||| | ||||| | ||| ||||| Sbjct 494526 TCGCGGTGTACTGAAGGTCTTTTTGGAGAACGTTATTCGGGATGCCGTGACCTACACCGA 494467 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| || || ||||| || ||| | |||||| | || ||||| |||||||| ||||| Sbjct 494466 ACACGCGAAGCGCAAGACCGTAACCGCTATGGATGTTGTTTATGCCTTGAAACGCCAAGG 494407 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 |||| | || || ||||| Sbjct 494406 TCGTACTCTGTACGGCTTTGG 494386 Score = 145 bits (160), Expect = 1e-30 Identities = 191/262 (73%), Gaps = 2/262 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||||||| | || || | | || ||||| || ||||| || || ||||| ||||| || | Sbjct 500988 CGCTAAGAGGCACCGTAAGGTC-CTTCGCGACAACATTCAGGGCATCACGAAGCCCGCCA 500930 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 | || || ||||||| ||||| ||||| || ||| |||| || | |||| ||||||| Sbjct 500929 TTCGCCGCTTGGCTCGCCGTGGGGGAGTGAAACGTATCTCCGGGCTCATCTACGAAGAGA 500870 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | || || ||| ||||| | ||| |||||||| ||||| | ||| |||| Sbjct 500869 CCCGAGGCGTCTTAAAGGTCTTCTTGGAGAACGTTATCCGGGATGCGGTTACCTACACCG 500810 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 | || || || | ||||| || || ||||||| |||| ||||| |||||||| || | Sbjct 500809 AACATGCCAAGAGAAAGACGGTGACTGCCATGGACGTCGTTTATGCTTTGAAACGCCAGG 500750 Query 16671 GCCGTAAGATTTATGGTTTTGG 16692 |||| | | ||||||||||| Sbjct 500749 GCCGCACCTTGTATGGTTTTGG 500728 >seq24556 Length=84784 Score = 165 bits (182), Expect = 1e-36 Identities = 180/239 (75%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 ||||| ||||||||||| || ||||||||||| || ||||| |||||||||||||| || Sbjct 45690 CTTCGCGATAACATCCAGGGCATCACCAAGCCGGCCATCCGCCGTCTGGCTCGTCGCGGA 45631 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || |||||| |||| || || |||| || |||| || | || ||||| ||||| Sbjct 45630 GGCGTGAAGCGTATCTCGGGCCTGATCTACGAGGAGACCCGCGGCGTCCTGAAGGTCTTC 45571 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| ||| |||| || || || ||| ||||||||||| || | ||||| ||| Sbjct 45570 CTGGAGAACGTGATCCGCGACGCCGTCACCTACACCGAGCACGCCAAGAGGAAGACGGTC 45511 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 || ||||||| | ||||| || ||||| || || ||||| | | | || || || || Sbjct 45510 ACGGCCATGGACGTGGTCTACGCCTTGAAGCGCCAGGGCCGCACGCTCTACGGCTTCGG 45452 >seq19558 Length=384432 Score = 143 bits (158), Expect = 4e-30 Identities = 180/247 (73%), Gaps = 0/247 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || |||||||||||||| || || ||||| |||||||| || ||||||| ||||| Sbjct 373408 CTCCGTGATAACATCCAAGGCATTACGAAGCCGGCTATCCGCCGCTTGGCTCGCCGTGGA 373467 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||||| | ||||| ||| |||| ||||||| |||| || || ||| ||||| Sbjct 373468 GGCGTAAAGCGAATTTCTGGCTTGATCTACGAAGAGACCCGTGGAGTATTAAAGGTCTTC 373527 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || | | ||| |||| |||||| | || || |||||||| ||| | ||||| || Sbjct 373528 CTGGAAAACGTGATCCGAGATGCTGTGACTTACACAGAGCACGCCAAAAGGAAGACCGTG 373587 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 || ||||||| | || || || |||| || ||||| || | | || || ||||| Sbjct 373588 ACGGCCATGGACGTGGTGTACGCGCTGAAGCGCCAAGGTCGCACCTTGTACGGCTTTGGG 373647 Query 16694 AGTTAAT 16700 | |||| Sbjct 373648 GGCTAAT 373654 >seq24053 Length=88915 Score = 105 bits (116), Expect = 1e-18 Identities = 156/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || |||||||||||||| || || ||||| || || || || ||||| || || || Sbjct 86729 CTCCGGGATAACATCCAAGGCATTACGAAGCCCGCCATTCGCCGACTGGCCCGGCGCGGG 86670 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||||| | || || | |||| || || | || | || |||| ||||| Sbjct 86669 GGCGTGAAGCGGATTTCGGGGCTCATCTACGAGGAAACGCGGGGCGTCCTGAAAGTCTTC 86610 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| ||| |||| || || | || ||||||||||| || | ||||| ||| Sbjct 86609 CTGGAGAACGTGATCCGCGACGCGGTGACTTACACCGAGCACGCCAAGAGGAAGACGGTC 86550 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 || | |||||| | ||||| || |||| || |||||||| Sbjct 86549 ACGGCTATGGATGTGGTCTACGCCCTGAAGCGCCAAGGCCG 86509 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79048792070919