Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vipera_20berus_20berus_20[genbank_20GCA_5F000800605.1_202014-12-10] 28,883 sequences; 1,532,390,814 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq10558 122 9e-23 >seq10558 Length=413728 Score = 122 bits (134), Expect = 9e-23 Identities = 116/147 (79%), Gaps = 1/147 (1%) Strand=Plus/Minus Query 21487 ACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCATTAA 21546 |||| || |||| |||| ||||| || | ||||||||||| || | |||||||||| Sbjct 114613 ACAAGCCATACCT-CATCTCTACTAATCAGCTCATTAGAAAAAGTAAGTCCGGGCATTAG 114555 Query 21547 TCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGCCCTCAAC 21606 |||| || |||| |||||||||||| ||||| | || |||||||| || || ||||| Sbjct 114554 ACCTCGTTTCTTTAGCCAAAATATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCAAC 114495 Query 21607 GGCAGCAAATGCAACTAATCGTTCACC 21633 ||||||||||| |||| |||||||| Sbjct 114494 TGCAGCAAATGCTACTATACGTTCACC 114468 Score = 84.2 bits (92), Expect = 2e-11 Identities = 111/154 (72%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 21126 TTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTT 21185 |||| ||||| ||||| || | ||| ||||||| | ||||||| | ||||| Sbjct 116786 TTTAGAAATCTGCATCCAAAGTGAATGAATTATCTGCAGGACTTGACATCACACCCATCC 116727 Query 21186 TTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATT 21245 ||||||| || | || | ||||| || || || || || ||||||| || ||| | Sbjct 116726 TTTGATATTCTCCTACACGCTTTTCAAAGAAGTTGGTTTTGCCTTCCAGAGAGATATTCT 116667 Query 21246 CCATAAAATCAAATGGATTTTCAGATTTAAATAT 21279 ||||||| ||||||||||| |||| || ||||| Sbjct 116666 CCATAAAGTCAAATGGATTCTCAGCCTTGAATAT 116633 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531708763864920