Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vipera_20berus_20berus_20[genbank_20GCA_5F000800605.1_202014-12-10] 28,883 sequences; 1,532,390,814 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq25428 114 3e-20 seq10558 100 7e-16 >seq25428 Length=70394 Score = 114 bits (126), Expect = 3e-20 Identities = 117/153 (76%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 364111 GCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATG 364170 || ||| |||| |||| |||||||| || || |||| ||||| || || ||||| ||| Sbjct 13376 GCCCAGCAGCTGTGGTACGCCATCATCGAGTCTCAGACGGAGACGGGGACGCCCTACATG 13317 Query 364171 TTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAG 364230 | ||||| || | |||||||||||| |||||||||| |||| || || || || Sbjct 13316 CTCTACAAGGACGCCTGCAACCGCAAGAGCAACCAGCAGAACCTGGGCACCATCAAGTGC 13257 Query 364231 AGCAACCTATGTACCGAGATTATTGAATACACC 364263 |||||||| || ||||||||| | || |||||| Sbjct 13256 AGCAACCTCTGCACCGAGATTGTGGAGTACACC 13224 >seq10558 Length=413728 Score = 100 bits (110), Expect = 7e-16 Identities = 102/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 22489 GAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCA 22548 |||||| | | |||||||||| |||||||| || ||||||||||| | ||| || Sbjct 114471 GAACGTATAGTAGCATTTGCTGCAGTTGAAGGAATCTTCTTTTCTGGCTCTTTTGCATCA 114530 Query 22549 ATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATT 22608 || ||||||||||| ||||| | | ||||| || || || ||||| |||||| | ||| Sbjct 114531 ATATTTTGGCTAAAGAAACGAGGTCTAATGCCCGGACTTACTTTTTCTAATGAGCTGATT 114590 Query 22609 AGCCGAGATGAGG 22621 || ||||||||| Sbjct 114591 AGTAGAGATGAGG 114603 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1302871276486506