Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vipera_20berus_20berus_20[genbank_20GCA_5F000800605.1_202014-12-10] 28,883 sequences; 1,532,390,814 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq10558 93.3 5e-14 seq5028 84.2 2e-11 >seq10558 Length=413728 Score = 93.3 bits (102), Expect = 5e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 93128 ATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATT 93187 |||| |||||| || || | || || | || ||||||||||| |||||||||||| Sbjct 114589 ATCAGCTCATTAGAAAAAGTAAGTCCGGGCATTAGACCTCGTTTCTTTAGCCAAAATATT 114530 Query 93188 GAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTC 93246 || |||||| |||||||| || || ||||| || || |||||||| || |||||||| Sbjct 114529 GATGCAAAAGAGCCAGAAAAGAAGATTCCTTCAACTGCAGCAAATGCTACTATACGTTC 114471 Score = 91.5 bits (100), Expect = 2e-13 Identities = 79/98 (81%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 93593 ACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGA 93652 || ||||| | ||||| || || || |||||||| |||||||| | ||| ||||| || Sbjct 105910 ACCTCTTCCGCTGTCCAGAATGACGCCTCTGCTTTCTTGTACATTTGCCAGATGTCATGG 105851 Query 93653 TATTGAATTGGAAATATGACAAAACGATTAGGGTTATC 93690 |||||||| ||||| ||||||||||| | ||| ||||| Sbjct 105850 TATTGAATAGGAAAAATGACAAAACGGTGAGGATTATC 105813 >seq5028 Length=21598 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 93362 ATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGG 93421 ||||| || || ||||||| | ||||| |||||||| ||||| || |||| || || Sbjct 2543 ATGTAGGTGTCTATTAACAAACTGTACATCTCAGAATGAACATTTTCTATTGATATCTGA 2484 Query 93422 AATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTG 93462 || || |||||||| | |||||| | || |||||||||||| Sbjct 2483 AAGCCATAGAAACAGCGAGCTTCTGGGACCTGCACTTCTTG 2443 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556659752368920