Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vipera_20berus_20berus_20[genbank_20GCA_5F000800605.1_202014-12-10] 28,883 sequences; 1,532,390,814 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq25442 158 2e-33 seq27101 127 4e-24 seq8970 87.8 3e-12 >seq25442 Length=71287 Score = 158 bits (174), Expect = 2e-33 Identities = 160/206 (78%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 68258 GTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTG 68317 ||| || |||||||| || |||||||| || || ||||| || | |||||||| | ||| Sbjct 26947 GTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCTTCCAGCTG 26888 Query 68318 CTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTT 68377 || || || || || || || || ||||| || |||||||||||||| || || ||||| Sbjct 26887 TTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCCTTATCCTGGATCTT 26828 Query 68378 TGCCTTGACGGCCTCGATGGTGTCTGCTGAT-TCTACTTCCAAGGTGATGGTTTTTCCCG 68436 ||||||||| ||| |||||||| |||| || || || | |||||||||||| || | Sbjct 26827 GGCCTTGACGTTCTCAATGGTGTC-GCTGGGCTCCACCTCTAGGGTGATGGTTTTCCCAG 26769 Query 68437 TGAGGGTCTTGACGAATATCTGCATT 68462 | | |||||| || || ||||||||| Sbjct 26768 TCAAGGTCTTCACAAAGATCTGCATT 26743 >seq27101 Length=56424 Score = 127 bits (140), Expect = 4e-24 Identities = 124/157 (79%), Gaps = 2/157 (1%) Strand=Plus/Minus Query 68307 TCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTG 68366 ||||| | |||||| ||||| || || || || || |||||||| |||||||||||||| Sbjct 14642 TCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTA 14583 Query 68367 TCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGTGAT 68425 ||||| ||||| |||||||| ||| |||||||| ||| | || || |||| ||||| Sbjct 14582 TCTTGGATCTTAGCCTTGACATTCTCAATGGTGTC-GCTGGGCTCCACCTCCAGAGTGAT 14524 Query 68426 GGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 ||| || || || | |||||| || || ||||||||| Sbjct 14523 GGTCTTCCCAGTCAAGGTCTTCACAAAGATCTGCATT 14487 Score = 105 bits (116), Expect = 1e-17 Identities = 93/115 (81%), Gaps = 1/115 (1%) Strand=Plus/Minus Query 68255 CAAG-TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTA 68313 |||| || || ||||||||||| |||||||| || || ||||| || | |||||||| | Sbjct 16182 CAAGATGGAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCA 16123 Query 68314 ACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTC 68368 |||||| || ||||| || || || || |||||||| |||||||||||||| || Sbjct 16122 GCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCGGGAGGAATGCCTTCCTTATC 16068 >seq8970 Length=181473 Score = 87.8 bits (96), Expect = 3e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCC 68417 ||||||||||| ||||| ||||||||||| || || ||||| || || || || Sbjct 140735 CCTTCCTTGTCCTGAATTTTTGCCTTGACATTTTCAATTGTGTCACTTGGCTCCACCTCA 140794 Query 68418 AAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465 | |||||||||||| || |||||||| || || || ||||||||| || Sbjct 140795 AGGGTGATGGTTTTGCCGGTGAGGGTTTTCACAAAAATCTGCATTGTG 140842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921289659752760